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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302381 (23 seq.)
>W1711091115
LTBC01000015
Bacillota
Moorella mulderi DSM 14980 [LTBC]
51594
51519
-
Glu
CTC
[ENA]
¡û
>W1711352254
MDDB01000001
Bacillota
Moorella thermoacetica [MDDB]
110147
110072
-
Glu
CTC
[ENA]
¡û
>W1711352336
MDDC01000011
Bacillota
Moorella thermoacetica [MDDC]
12795
12870
+
Glu
CTC
[ENA]
¡û
>W1711352356
MDDD01000001
Bacillota
Moorella thermoacetica [MDDD]
109728
109653
-
Glu
CTC
[ENA]
¡û
>W1711352434
MDDE01000005
Bacillota
Moorella thermoacetica [MDDE]
56041
56116
+
Glu
CTC
[ENA]
¡û
>W1711428547
MIHH01000007
Bacillota
Moorella thermoacetica [MIHH]
110277
110202
-
Glu
CTC
[ENA]
¡û
>W1711428574
MIIF01000001
Bacillota
Moorella thermoacetica [MIIF]
144147
144072
-
Glu
CTC
[ENA]
¡û
>C171055215
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
1307945
1307870
-
Glu
CTC
-
¡û
>C171058980
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1079500
1079425
-
Glu
CTC
-
¡û
>C014198
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1152574
1152499
-
Glu
CTC
[Ensembl]
¡û
>W141229821
BARR01000042
Bacillota
Moorella thermoacetica Y72 [BARR]
122460
122385
-
Glu
CTC
[ENA]
¡û
>WENV170676033
LDZR01000364
[LDZR] terrestrial metagenome; oil reservoir sample K2
2555
2630
+
Glu
CTC
[ENA]
¢þ
>C191073456
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1156814
1156739
-
Glu
CTC
-
¡û
>W09100937
AADT03000019
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
7293
7218
-
Glu
CTC
[ENA]
¡û
>W1910180083
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
311850
311775
-
Glu
CTC
[ENA]
¡û
>W1910180115
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
2878651
2878726
+
Glu
CTC
[ENA]
¡û
>W1810010429
BFFN01000004
Bacillota
Moorella sp. Hama-1 [BFFN]
123416
123491
+
Glu
CTC
[ENA]
¡û
>W1810367297
PVXL01000055
Bacillota
Moorella stamsii DSM 26271 [PVXL]
112724
112799
+
Glu
CTC
[ENA]
¡û
>W1810367318
PVXM01000004
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
46065
45990
-
Glu
CTC
[ENA]
¡û
>C151094384
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1047301
1047226
-
Glu
CTC
-
¡û
>C151094435
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1146836
1146761
-
Glu
CTC
-
¡û
>W1510100290
CELZ01000061
Bacillota
Moorella glycerini NMP [CELZ]
107957
108032
+
Glu
CTC
[ENA]
¡û
>W1610925314
LTBC01000015
Bacillota
Moorella mulderi DSM 14980 [LTBC]
51594
51519
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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