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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302383 (91 seq.)
>W1710777267
LJBJ02000002
Actinomycetota
Rothia kristinae [LJBJ]
218898
218825
-
Trp
CCA
[ENA]
¡û
>W1710868731
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
2033786
2033859
+
Trp
CCA
[ENA]
¡û
>W1710875648
LMOO01000001
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
1476013
1475940
-
Trp
CCA
[ENA]
¡û
>W1710996383
LQBJ01000013
Actinomycetota
Kocuria palustris [LQBJ]
301309
301236
-
Trp
CCA
[ENA]
¡û
>W1710996401
LQBK01000002
Actinomycetota
Kocuria polaris [LQBK]
195285
195358
+
Trp
CCA
[ENA]
¡û
>W1711178709
LWGZ01000225
Actinomycetota
Rothia kristinae [LWGZ]
688
615
-
Trp
CCA
[ENA]
¡û
>W131234882
AULD01000005
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
73942
73869
-
Trp
CCA
[ENA]
¡û
>W1711491775
MKJW01000033
Actinomycetota
Kocuria sp. CNJ-770 [MKJW]
1954
2027
+
Trp
CCA
[ENA]
¡û
>W1711503074
MKTH01000008
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
389836
389763
-
Trp
CCA
[ENA]
¡û
>W1711503115
MKTI01000003
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
173348
173421
+
Trp
CCA
[ENA]
¡û
>W1711505462
MKVN01000023
Actinomycetota
Micrococcales bacterium 73-13 [MKVN]
92165
92240
+
Trp
CCA
[ENA]
¡û
>W1711589217
MODZ01000009
Actinomycetota
Rothia kristinae [MODZ]
51780
51707
-
Trp
CCA
[ENA]
¡û
>W131060630
ANHZ02000002
Actinomycetota
Kocuria palustris PEL [ANHZ]
178190
178117
-
Trp
CCA
[ENA]
¡û
>WENV180028288
FTJA01049506
[FTJA] metagenome; soil
474
399
-
Trp
CCA
[ENA]
¢þ
>C08005751
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
638264
638337
+
Trp
CCA
[Ensembl]
¡û
>WENV183736168
PJUC01000080
[PJUC] soil metagenome; Soil enriched on filter paper
37462
37535
+
Trp
CCA
[ENA]
¢þ
>W141428893
JEOE01000017
Actinomycetota
Cellulomonas sp. HZM [JEOE]
54393
54466
+
Trp
CCA
[ENA]
¡û
>W09108571
ABTJ01000171
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
874
947
+
Trp
CCA
[ENA]
¡û
>C181055964
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
1189188
1189115
-
Trp
CCA
-
¡û
>C191056064
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
611295
611368
+
Trp
CCA
-
¡û
>C191134149
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
306596
306671
+
Trp
CCA
-
¡û
>C191144201
CP035504
Actinomycetota
Kocuria indica CE7 [CP035504]
674201
674274
+
Trp
CCA
-
¡û
>C191146762
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
2505028
2505101
+
Trp
CCA
-
¡û
>W141531770
JHEL01000015
Actinomycetota
Curtobacterium sp. S6 [JHEL]
1031015
1030942
-
Trp
CCA
[ENA]
¡û
>C191210046
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1081494
1081567
+
Trp
CCA
-
¡û
>W141563789
JIAG01000001
Actinomycetota
Haematomicrobium sanguinis DSM 21259 [JIAG]
90397
90324
-
Trp
CCA
[ENA]
¡û
>W1910129205
BHYL01000417
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
4340
4267
-
Trp
CCA
[ENA]
¡û
>W1910155499
BIMR01000400
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
7712
7785
+
Trp
CCA
[ENA]
¡û
>W1910183596
BJNW01000001
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
201073
201000
-
Trp
CCA
[ENA]
¡û
>W1910334106
FSNK01000123
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
5734
5661
-
Trp
CCA
[ENA]
¡û
>W1910442276
FWFC01000004
Actinomycetota
Kocuria massiliensis Marseille-P3598 [FWFC]
558753
558826
+
Trp
CCA
[ENA]
¡û
>W1910471661
FXBD01000031
Actinomycetota
Kocuria marina [FXBD]
11851
11924
+
Trp
CCA
[ENA]
¡û
>W1910636703
LOMZ01000001
Actinomycetota
Kocuria flava S43 [LOMZ]
1868989
1869062
+
Trp
CCA
[ENA]
¡û
>W1910782951
MPIM01000029
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
83191
83116
-
Trp
CCA
[ENA]
¡û
>W1910792307
MRAS01000004
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
44733
44808
+
Trp
CCA
[ENA]
¡û
>W1910804110
MTCK01000098
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
124239
124164
-
Trp
CCA
[ENA]
¡û
>W1910827492
MWSL01000004
Actinomycetota
Kocuria indica DSM 25126 [MWSL]
2393
2466
+
Trp
CCA
[ENA]
¡û
>W1910831775
MWZD01000021
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
4628
4701
+
Trp
CCA
[ENA]
¡û
>W1911114538
NOIQ01000001
Actinomycetota
Rothia koreensis JCM 15915 [NOIQ]
25191
25264
+
Trp
CCA
[ENA]
¡û
>W1911114587
NOIR01000001
Actinomycetota
Kocuria sp. 257 [NOIR]
925114
925187
+
Trp
CCA
[ENA]
¡û
>W1911114629
NOIS01000001
Actinomycetota
Kocuria sp. 36 [NOIS]
343670
343743
+
Trp
CCA
[ENA]
¡û
>W1911114728
NOIU01000001
Actinomycetota
Rothia halotolerans JCM 31975 [NOIU]
233305
233232
-
Trp
CCA
[ENA]
¡û
>W1911114784
NOIV01000002
Actinomycetota
Rothia kristinae ATCC 27570 [NOIV]
371995
372068
+
Trp
CCA
[ENA]
¡û
>W1911245611
NSKF01000007
Actinomycetota
Kocuria sp. WN036 [NSKF]
109124
109051
-
Trp
CCA
[ENA]
¡û
>W1911532913
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
1213901
1213826
-
Trp
CCA
[ENA]
¡û
>W1911582731
PHOA01000024
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
9597
9524
-
Trp
CCA
[ENA]
¡û
>W1911596809
PNHL01000003
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
141281
141207
-
Trp
CCA
[ENA]
¡û
>W1911719683
QQXL01000001
Actinomycetota
Galactobacter caseinivorans JZ R-183 [QQXL]
202209
202282
+
Trp
CCA
[ENA]
¡û
>W1810189400
PKJA01000001
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
1179335
1179408
+
Trp
CCA
[ENA]
¡û
>W1810200176
PNRK01000001
Actinomycetota
Kocuria rhizophila D2 [PNRK]
125865
125792
-
Trp
CCA
[ENA]
¡û
>W1810584671
QFBJ01000001
Actinomycetota
Kocuria rosea ATCC 186 [QFBJ]
587567
587494
-
Trp
CCA
[ENA]
¡û
>W1810584731
QFBK01000009
Actinomycetota
Kocuria rosea ATCC 516 [QFBK]
36212
36285
+
Trp
CCA
[ENA]
¡û
>W1810587376
QFKX01000001
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
900404
900477
+
Trp
CCA
[ENA]
¡û
>W1810700977
QMDP01000188
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
1947
2020
+
Trp
CCA
[ENA]
¡û
>W1810918521
QWKP01000144
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
6758
6685
-
Trp
CCA
[ENA]
¡û
>C151095261
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
2292665
2292592
-
Trp
CCA
-
¡û
>W1510085910
CDWJ01000001
Actinomycetota
Leucobacter sp. 4J7B1 [CDWJ]
677635
677710
+
Trp
CCA
[ENA]
¡û
>C10103448
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
2982756
2982683
-
Trp
CCA
[Ensembl]
¡û
>C11105017
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1081490
1081563
+
Trp
CCA
[Ensembl]
¡û
>W1511008727
JHBW01000070
Actinomycetota
Leucobacter musarum CBX152 [JHBW]
25541
25466
-
Trp
CCA
[ENA]
¡û
>W1511013976
JHEI01000147
Actinomycetota
Leucobacter celer CBX151 [JHEI]
57206
57133
-
Trp
CCA
[ENA]
¡û
>W1511317239
JPWX01000388
Actinomycetota
Kocuria rhizophila RF [JPWX]
66
139
+
Trp
CCA
[ENA]
¡û
>W1511352685
JROM01000007
Actinomycetota
Kocuria marina SO9-6 [JROM]
99327
99254
-
Trp
CCA
[ENA]
¡û
>W1511353047
JROX01000008
Actinomycetota
Kocuria sp. ZOR0020 [JROX]
3526
3453
-
Trp
CCA
[ENA]
¡û
>W1511489669
JWTC01000021
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
54227
54154
-
Trp
CCA
[ENA]
¡û
>W1511638465
LDNX01000116
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
2460
2533
+
Trp
CCA
[ENA]
¡û
>W11163686
AFID01000002
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
421356
421283
-
Trp
CCA
[ENA]
¡û
>C161054296
CP013254
Actinomycetota
Kocuria flava HO-9041 [CP013254]
3170865
3170792
-
Trp
CCA
[Ensembl]
¡û
>W121070965
AJXN01000006
Actinomycetota
Kocuria atrinae C3-8 [AJXN]
22022
22095
+
Trp
CCA
[ENA]
¡û
>W1610069457
BCSM01000009
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
58262
58335
+
Trp
CCA
[ENA]
¡û
>W1610112374
CZJU01000177
Actinomycetota
Kocuria salsicia [CZJU]
5212
5285
+
Trp
CCA
[ENA]
¡û
>W1610112476
CZJX01000044
Actinomycetota
Kocuria varians [CZJX]
58967
58894
-
Trp
CCA
[ENA]
¡û
>W1610590059
LDRD01000004
Actinomycetota
Rothia kristinae [LDRD]
16064
16137
+
Trp
CCA
[ENA]
¡û
>W1610590172
LDRF01000050
Actinomycetota
Rothia kristinae [LDRF]
3847
3774
-
Trp
CCA
[ENA]
¡û
>W1610590265
LDRH01000122
Actinomycetota
Rothia kristinae [LDRH]
4594
4521
-
Trp
CCA
[ENA]
¡û
>W1610590304
LDRI01000071
Actinomycetota
Rothia kristinae [LDRI]
15487
15414
-
Trp
CCA
[ENA]
¡û
>W1610641453
LJBJ02000002
Actinomycetota
Rothia kristinae [LJBJ]
218898
218825
-
Trp
CCA
[ENA]
¡û
>W1610731077
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
2033786
2033859
+
Trp
CCA
[ENA]
¡û
>W1610737994
LMOO01000001
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
1476013
1475940
-
Trp
CCA
[ENA]
¡û
>W1610851040
LQBJ01000013
Actinomycetota
Kocuria palustris [LQBJ]
301309
301236
-
Trp
CCA
[ENA]
¡û
>W1610851058
LQBK01000002
Actinomycetota
Kocuria polaris [LQBK]
195285
195358
+
Trp
CCA
[ENA]
¡û
>W1610986756
LWGZ01000225
Actinomycetota
Rothia kristinae [LWGZ]
688
615
-
Trp
CCA
[ENA]
¡û
>W1710066830
BCSM01000009
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
58262
58335
+
Trp
CCA
[ENA]
¡û
>W1710115078
CZJU01000177
Actinomycetota
Kocuria salsicia [CZJU]
5212
5285
+
Trp
CCA
[ENA]
¡û
>W1710115180
CZJX01000044
Actinomycetota
Kocuria varians [CZJX]
58967
58894
-
Trp
CCA
[ENA]
¡û
>W1710566722
FOSE01000001
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
1093873
1093946
+
Trp
CCA
[ENA]
¡û
>W1710607460
FXAC01000004
Actinomycetota
Kocuria indica [FXAC]
2393
2466
+
Trp
CCA
[ENA]
¡û
>W1710709339
LDRD01000004
Actinomycetota
Rothia kristinae [LDRD]
16064
16137
+
Trp
CCA
[ENA]
¡û
>W1710709452
LDRF01000050
Actinomycetota
Rothia kristinae [LDRF]
3847
3774
-
Trp
CCA
[ENA]
¡û
>W1710709545
LDRH01000122
Actinomycetota
Rothia kristinae [LDRH]
4594
4521
-
Trp
CCA
[ENA]
¡û
>W1710709584
LDRI01000071
Actinomycetota
Rothia kristinae [LDRI]
15487
15414
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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