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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302388 (45 seq.)
>W1711091121
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
205
130
-
Ala
TGC
[ENA]
¡û
>W1711352347
MDDC01000054
Bacillota
Moorella thermoacetica [MDDC]
251
176
-
Ala
TGC
[ENA]
¡û
>W1711352422
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
30152
30077
-
Ala
TGC
[ENA]
¡û
>W1711352425
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
22716
22641
-
Ala
TGC
[ENA]
¡û
>W1711428565
MIHH01000082
Bacillota
Moorella thermoacetica [MIHH]
296
371
+
Ala
TGC
[ENA]
¡û
>W1711428618
MIIF01000057
Bacillota
Moorella thermoacetica [MIIF]
202
127
-
Ala
TGC
[ENA]
¡û
>C171055170
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
156580
156655
+
Ala
TGC
-
¡û
>C014159
CP000232
Bacillota
Moorella thermoacetica [CP000232]
149830
149905
+
Ala
TGC
[Ensembl]
¡û
>WENV180097915
MTBK01218430
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
63
138
+
Ala
TGC
[ENA]
¢þ
>WENV180469896
OBYM01024665
[OBYM] human gut metagenome; faeces
837
762
-
Ala
TGC
[ENA]
¢þ
>WENV180827031
ODKA01000001
[ODKA] human metagenome; G_DNA_Stool
467771
467846
+
Ala
TGC
[ENA]
¢þ
>WENV180841301
ODKJ01112734
[ODKJ] human metagenome; G_DNA_Stool
135
60
-
Ala
TGC
[ENA]
¢þ
>WENV180886630
ODME01123245
[ODME] human metagenome; G_DNA_Stool
1
76
+
Ala
TGC
[ENA]
¢þ
>WENV180893981
ODMR01025556
[ODMR] human metagenome; G_DNA_Stool
126
201
+
Ala
TGC
[ENA]
¢þ
>WENV181185873
OEMD01000080
[OEMD] metagenome; 1998
69
144
+
Ala
TGC
[ENA]
¢þ
>WENV181192324
OEPS010572705
[OEPS] soil metagenome; soil
17
92
+
Ala
TGC
[ENA]
¢þ
>WENV181297601
OFHK01082196
[OFHK] soil metagenome; Clay
53
128
+
Ala
TGC
[ENA]
¢þ
>WENV181343688
OFMJ01006788
[OFMJ] human gut metagenome; human gut
2586
2511
-
Ala
TGC
[ENA]
¢þ
>WENV181408190
OGCH01000919
[OGCH] hot springs metagenome; hot springs
357
282
-
Ala
TGC
[ENA]
¢þ
>WENV181411852
OGCI01052028
[OGCI] hot springs metagenome; Hot spring water
792
717
-
Ala
TGC
[ENA]
¢þ
>WENV181413944
OGCK01176466
[OGCK] hot springs metagenome; hot spring sediment
224
152
-
Ala
TGC
[ENA]
¢þ
>WENV181905071
OGXX01080334
[OGXX] human gut metagenome; faeces
679
604
-
Ala
TGC
[ENA]
¢þ
>WENV182019119
OHBX01040051
[OHBX] human gut metagenome; feces
95
20
-
Ala
TGC
[ENA]
¢þ
>WENV182038413
OHDE01012612
[OHDE] human gut metagenome; feces
150
75
-
Ala
TGC
[ENA]
¢þ
>WENV182168306
OHMS01060484
[OHMS] human gut metagenome; feces
415
490
+
Ala
TGC
[ENA]
¢þ
>WENV182274872
OHUK01018996
[OHUK] human gut metagenome; feces
413
488
+
Ala
TGC
[ENA]
¢þ
>W141229825
BARR01000060
Bacillota
Moorella thermoacetica Y72 [BARR]
75
1
-
Ala
TGC
[ENA]
¡û
>WENV182628604
OJKQ01019452
[OJKQ] metagenome; faeces
789
714
-
Ala
TGC
[ENA]
¢þ
>WENV182728039
OJPW01000828
[OJPW] human gut metagenome; stool sample
21157
21232
+
Ala
TGC
[ENA]
¢þ
>WENV182754444
OJRD01014481
[OJRD] human gut metagenome; stool sample
82
7
-
Ala
TGC
[ENA]
¢þ
>WENV183190918
OLPR01002786
[OLPR] human gut metagenome; faeces
10129
10054
-
Ala
TGC
[ENA]
¢þ
>WENV183367845
OLXQ01062613
[OLXQ] human gut metagenome; feces
55
130
+
Ala
TGC
[ENA]
¢þ
>WENV170046352
CDYY01033344
[CDYY] gut metagenome; human stools
827
752
-
Ala
TGC
[ENA]
¢þ
>WENV170636412
JFBN01235487
[JFBN] chicken gut metagenome; ceca of Broiler chicken
203
128
-
Ala
TGC
[ENA]
¢þ
>WENV170676550
LDZS01001213
[LDZS] terrestrial metagenome; oil reservoir sample K3
75
150
+
Ala
TGC
[ENA]
¢þ
>C191073416
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
156557
156632
+
Ala
TGC
-
¡û
>W09100963
AADT03000052
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
2202
2277
+
Ala
TGC
[ENA]
¡û
>W1910180149
BJKO01000004
Bacillota
Moorella sp. E306M [BJKO]
328
403
+
Ala
TGC
[ENA]
¡û
>W1911662009
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
2351639
2351564
-
Ala
TGC
[ENA]
¡û
>W1911662017
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
2006612
2006537
-
Ala
TGC
[ENA]
¡û
>C151094345
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
149481
149556
+
Ala
TGC
-
¡û
>C151094395
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
149480
149555
+
Ala
TGC
-
¡û
>W1510100243
CELZ01000013
Bacillota
Moorella glycerini NMP [CELZ]
36103
36028
-
Ala
TGC
[ENA]
¡û
>W1610925320
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
205
130
-
Ala
TGC
[ENA]
¡û
>W1710083569
BDJK01000046
Bacillota
Carboxydothermus pertinax [BDJK]
1735
1810
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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