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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302436 (44 seq.)
>W1711120926
LUHJ01000039
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
18071
18143
+
Met
CAT
[ENA]
¡û
>W1711335795
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
833868
833796
-
Met
CAT
[ENA]
¡û
>W1711509502
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
1956855
1956927
+
Met
CAT
[ENA]
¡û
>W1711509554
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
2144971
2145043
+
Met
CAT
[ENA]
¡û
>W1711711332
MTAV01000053
Cyanobacteriota
Nostoc sp. T09 [MTAV]
16985
17057
+
Met
CAT
[ENA]
¡û
>W1711711366
MTAW01000106
Cyanobacteriota
Nostoc sp. 106C [MTAW]
10480
10552
+
Met
CAT
[ENA]
¡û
>W1711711436
MTAX01000072
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
241093
241165
+
Met
CAT
[ENA]
¡û
>W1712002238
NEED01000069
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
323304
323376
+
Met
CAT
[ENA]
¡û
>C001231
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
2938983
2938911
-
Met
CAT
[Ensembl]
¡û
>W131089982
AOFE01000036
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
184471
184543
+
Met
CAT
[ENA]
¡û
>C015292
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
6070047
6070119
+
Met
CAT
[Ensembl]
¡û
>w021695
AAVW01000035
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
7889
7964
+
Met
CAT
[ENA]
¡û
>C171064182
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
2364831
2364903
+
Met
CAT
-
¡û
>WENV180037117
FVAA010628739
[FVAA] soil metagenome; Soil
2147
2219
+
Ile2
CAT
[ENA]
¢þ
>WENV180037680
FVAA011472074
[FVAA] soil metagenome; Soil
262
190
-
Ile2
CAT
[ENA]
¢þ
>WENV180041944
LLBZ010771421
[LLBZ] soil metagenome; soil from tomato rhizosphere
557
485
-
Ile2
CAT
[ENA]
¢þ
>W08009365
ABOY01000008
Cyanobacteriota
Gloeothece citriformis PCC 7424 [ABOY]
52081
52009
-
Met
CAT
[ENA]
¡û
>W08011366
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
220182
220256
+
Met
CAT
[ENA]
¡û
>C181004763
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
8092547
8092619
+
Met
CAT
-
¡û
>C181043641
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
3202880
3202808
-
Met
CAT
-
¡û
>C181078433
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
4662545
4662473
-
Met
CAT
-
¡û
>C191001276
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
6343506
6343434
-
Met
CAT
-
¡û
>C191001470
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
2307632
2307559
-
Met
CAT
-
¡û
>W09101162
AAEA01000016
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
5456
5528
+
Met
CAT
[ENA]
¡û
>W1910008421
BDGE01000093
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
76838
76910
+
Met
CAT
[ENA]
¡û
>C09103531
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
776262
776334
+
Met
CAT
[Ensembl]
¡û
>C151000952
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
2215817
2215890
+
Met
CAT
[Ensembl]
¡û
>C11106747
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1114393
1114319
-
Met
CAT
[Ensembl]
¡û
>C11106791
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1114393
1114319
-
Met
CAT
[Ensembl]
¡û
>W11143159
AEPQ01000159
Cyanobacteriota
Moorena producens 3L [AEPQ]
63884
63956
+
Met
CAT
[ENA]
¡û
>C161002495
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2245773
2245845
+
Met
CAT
[Ensembl]
¡û
>C161005334
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
2534328
2534400
+
Met
CAT
[Ensembl]
¡û
>W1610003527
AGCR01000019
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
33734
33806
+
Met
CAT
[ENA]
¡û
>W1610084853
CDHJ01000046
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
43837
43909
+
Met
CAT
[ENA]
¡û
>C131004200
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1207664
1207592
-
Met
CAT
[Ensembl]
¡û
>C131004273
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5381307
5381379
+
Met
CAT
[Ensembl]
¡û
>W1610656815
LJOR01000073
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
102288
102360
+
Met
CAT
[ENA]
¡û
>W1610932107
LUHI01000007
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
9018
8946
-
Met
CAT
[ENA]
¡û
>W1610932163
LUHJ01000039
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
18071
18143
+
Met
CAT
[ENA]
¡û
>W1610979396
LWAJ01000160
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
1029
1101
+
Met
CAT
[ENA]
¡û
>W1611066502
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
833868
833796
-
Met
CAT
[ENA]
¡û
>W1710004147
AGCR01000019
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
33734
33806
+
Met
CAT
[ENA]
¡û
>W1710087990
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2961668
2961596
-
Met
CAT
[ENA]
¡û
>W1710089715
CDHJ01000046
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
43837
43909
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK