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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30327 (40 seq.)
>W1710909304
LNQJ01000005
Actinomycetota
Arthrobacter sp. NIO-1057 [LNQJ]
311562
311472
-
Ser
CGA
[ENA]
¡û
>W1710916187
LNUU01000002
Actinomycetota
Arthrobacter sp. EpRS66 [LNUU]
409184
409096
-
Ser
CGA
[ENA]
¡û
>W1711618502
MPBI01000004
Actinomycetota
Glutamicibacter sp. 0426 [MPBI]
283841
283751
-
Ser
CGA
[ENA]
¡û
>W131210559
ATKN01000006
Actinomycetota
Arthrobacter sp. PAO19 [ATKN]
240565
240475
-
Ser
CGA
[ENA]
¡û
>WENV170593680
FUFK010967310
[FUFK] metagenome; unknown
208
298
+
Ser
CGA
[ENA]
¢þ
>C191100414
CP033081
Actinomycetota
Glutamicibacter nicotianae OTC-16 [CP033081]
484383
484293
-
Ser
CGA
-
¡û
>C191124740
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
403589
403499
-
Ser
CGA
-
¡û
>W1910182814
BJNE01000018
Actinomycetota
Glutamicibacter nicotianae NBRC 14234 [BJNE]
22330
22420
+
Ser
CGA
[ENA]
¡û
>W1910183694
BJNY01000009
Actinomycetota
Glutamicibacter uratoxydans NBRC 15515 [BJNY]
30356
30444
+
Ser
CGA
[ENA]
¡û
>W1911203369
NRGT01000023
Actinomycetota
Glutamicibacter sp. BW77 [NRGT]
26614
26524
-
Ser
CGA
[ENA]
¡û
>W1911203494
NRGV01000031
Actinomycetota
Glutamicibacter sp. BW80 [NRGV]
62444
62534
+
Ser
CGA
[ENA]
¡û
>W1911567632
PCPS01000003
Actinomycetota
Arthrobacter sp. MYb229 [PCPS]
73401
73491
+
Ser
CGA
[ENA]
¡û
>W1911567739
PCPU01000004
Actinomycetota
Arthrobacter sp. MYb224 [PCPU]
73186
73276
+
Ser
CGA
[ENA]
¡û
>W1911567819
PCPV01000018
Actinomycetota
Arthrobacter sp. MYb222 [PCPV]
59173
59263
+
Ser
CGA
[ENA]
¡û
>W1911567870
PCPW01000008
Actinomycetota
Arthrobacter sp. MYb221 [PCPW]
110828
110738
-
Ser
CGA
[ENA]
¡û
>W1911567985
PCPY01000004
Actinomycetota
Arthrobacter sp. MYb216 [PCPY]
73401
73491
+
Ser
CGA
[ENA]
¡û
>W1911568058
PCPZ01000005
Actinomycetota
Arthrobacter sp. MYb214 [PCPZ]
211288
211198
-
Ser
CGA
[ENA]
¡û
>W1911568113
PCQA01000004
Actinomycetota
Arthrobacter sp. MYb213 [PCQA]
352574
352484
-
Ser
CGA
[ENA]
¡û
>W1911568164
PCQB01000008
Actinomycetota
Arthrobacter sp. MYb211 [PCQB]
110828
110738
-
Ser
CGA
[ENA]
¡û
>W1911597794
PNQX01000002
Actinomycetota
Glutamicibacter arilaitensis JB182 [PNQX]
242211
242301
+
Ser
CGA
[ENA]
¡û
>W1810089807
PGEY01000001
Actinomycetota
Glutamicibacter mysorens DSM 12798 [PGEY]
3380175
3380085
-
Ser
CGA
[ENA]
¡û
>W1810091017
PGGT01000048
Actinomycetota
Zhihengliuella halotolerans La12 [PGGT]
97470
97380
-
Ser
CGA
[ENA]
¡û
>W1810196769
PNEZ01000001
Actinomycetota
Microbacterium halophytorum YZYP518 [PNEZ]
14505
14415
-
Ser
CGA
[ENA]
¡û
>W1810196839
PNFA01000003
Actinomycetota
Microbacterium halophytorum YJYP303 [PNFA]
14505
14415
-
Ser
CGA
[ENA]
¡û
>W1810201537
POAF01000006
Actinomycetota
Glutamicibacter soli NHPC-3 [POAF]
279179
279089
-
Ser
CGA
[ENA]
¡û
>C151092377
CP012171
Actinomycetota
Arthrobacter sp. LS16 [CP012171]
465914
465824
-
Ser
CGA
-
¡û
>C11100124
FQ311875
Actinomycetota
Glutamicibacter arilaitensis Re117 [FQ311875]
518434
518344
-
Ser
CGA
[Ensembl]
¡û
>W1511483959
JWMD01000018
Actinomycetota
Arthrobacter sp. W1 [JWMD]
5145
5235
+
Ser
CGA
[ENA]
¡û
>W1511624304
LCYH01000011
Actinomycetota
Arthrobacter sp. YC-RL1 [LCYH]
87420
87510
+
Ser
CGA
[ENA]
¡û
>C161045480
CP012750
Actinomycetota
Glutamicibacter halophytocola KLBMP 5180 [CP012750]
543928
543838
-
Ser
CGA
[Ensembl]
¡û
>C161055117
CP013297
Actinomycetota
Arthrobacter sp. YC-RL1 [CP013297]
3453980
3454070
+
Ser
CGA
[Ensembl]
¡û
>W1610041872
BAXF01000088
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
2640
2550
-
Ser
CGA
[ENA]
¡û
>W1610067432
BCQO01000006
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
265282
265192
-
Ser
CGA
[ENA]
¡û
>W1610515088
FMAT01000004
Actinomycetota
Arthrobacter sp. NIO-1057 [FMAT]
311562
311472
-
Ser
CGA
[ENA]
¡û
>W1610767663
LNQJ01000005
Actinomycetota
Arthrobacter sp. NIO-1057 [LNQJ]
311562
311472
-
Ser
CGA
[ENA]
¡û
>W1610774426
LNUU01000002
Actinomycetota
Arthrobacter sp. EpRS66 [LNUU]
409184
409096
-
Ser
CGA
[ENA]
¡û
>W1710038966
BAXF01000088
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
2640
2550
-
Ser
CGA
[ENA]
¡û
>W1710064805
BCQO01000006
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
265282
265192
-
Ser
CGA
[ENA]
¡û
>W1710500778
FMAT01000004
Actinomycetota
Arthrobacter sp. NIO-1057 [FMAT]
311562
311472
-
Ser
CGA
[ENA]
¡û
>W1710579323
FPCG01000012
Actinomycetota
Micrococcus terreus [FPCG]
15606
15516
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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