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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30332 (14 seq.)
>w012175
AAMD01000157
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
15489
15580
+
Ser
CGA
[ENA]
¡û
>WENV181184974
OEKZ01000440
[OEKZ] metagenome; 1998
2455
2368
-
Ser
CGA
[ENA]
¢þ
>WENV170556907
CXWL01015948
[CXWL] groundwater metagenome; biofilm material
4602
4689
+
Ser
CGA
[ENA]
¢þ
>C181060667
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
2346188
2346101
-
Ser
CGA
-
¡û
>C191128702
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2215239
2215152
-
Ser
CGA
-
¡û
>W141695209
JMCB01000015
Myxococcota
Hyalangium minutum [JMCB]
5795
5708
-
Ser
CGA
[ENA]
¡û
>W141695269
JMCC01000071
Myxococcota
Enhygromyxa salina [JMCC]
62823
62910
+
Ser
CGA
[ENA]
¡û
>W1911701614
QNUN01000016
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
216401
216488
+
Ser
CGA
[ENA]
¡û
>C11114356
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4149196
4149109
-
Ser
CGA
[Ensembl]
¡û
>C11119148
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
3285854
3285767
-
Ser
CGA
[Ensembl]
¡û
>C121012102
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2352065
2351978
-
Ser
CGA
[Ensembl]
¡û
>W1710513724
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
106860
106773
-
Ser
CGA
[ENA]
¡û
>W1710544106
FOAP01000001
Myxococcota
Stigmatella aurantiaca [FOAP]
580964
580877
-
Ser
CGA
[ENA]
¡û
>W1710554372
FOIJ01000027
Myxococcota
Stigmatella erecta [FOIJ]
36166
36079
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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