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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303339 (39 seq.)
>W1711188771
LWQT01000020
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
135061
134986
-
Ala
GGC
[ENA]
¡û
>W1711188822
LWQU01000104
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
201397
201322
-
Ala
GGC
[ENA]
¡û
>W1711286823
LZTK01000001
Alphaproteobacteria
Mesorhizobium loti [LZTK]
413763
413688
-
Ala
GGC
[ENA]
¡û
>W1711353664
MDET01000007
Alphaproteobacteria
Pseudaminobacter manganicus [MDET]
2661
2736
+
Ala
GGC
[ENA]
¡û
>C171033114
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
1873568
1873493
-
Ala
GGC
-
¡û
>W131045479
AMRM01000008
Alphaproteobacteria
Nitratireductor pacificus pht-3B [AMRM]
39232
39157
-
Ala
GGC
[ENA]
¡û
>W131181124
ARNQ01000045
Alphaproteobacteria
Pannonibacter phragmitetus DSM 14782 [ARNQ]
252750
252675
-
Ala
GGC
[ENA]
¡û
>W131250126
CAUM01000011
Alphaproteobacteria
Mesorhizobium metallidurans STM 2683 [CAUM]
22602
22527
-
Ala
GGC
[ENA]
¡û
>C013700
BA000012
Alphaproteobacteria
Mesorhizobium japonicum MAFF 303099 [BA000012]
4147036
4147111
+
Ala
GGC
[Ensembl]
¡û
>WENV180016715
FSVW01000036
[FSVW] metagenome; soil
3078
3003
-
Ala
GGC
[ENA]
¢þ
>WENV180020610
FTCZ01007242
[FTCZ] metagenome; soil
1006
931
-
Ala
GGC
[ENA]
¢þ
>WENV180041120
LLBZ010047134
[LLBZ] soil metagenome; soil from tomato rhizosphere
431
356
-
Ala
GGC
[ENA]
¢þ
>WENV180069671
MPLZ02123646
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2036
1961
-
Ala
GGC
[ENA]
¢þ
>W141065486
AQPH01000019
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
18719
18644
-
Ala
GGC
[ENA]
¡û
>WENV181402341
OFTY01000721
[OFTY] sludge metagenome; sludge
10618
10543
-
Ala
GGC
[ENA]
¢þ
>W141197523
AYVL01000007
Alphaproteobacteria
Mesorhizobium sp. LSJC280B00 [AYVL]
84066
84141
+
Ala
GGC
[ENA]
¡û
>W141199022
AYWR01000001
Alphaproteobacteria
Mesorhizobium sp. LNHC221B00 [AYWR]
216072
215997
-
Ala
GGC
[ENA]
¡û
>W141226115
BAJU01000011
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
13018
12943
-
Ala
GGC
[ENA]
¡û
>W141241820
CAHP01000035
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
19646
19721
+
Ala
GGC
[ENA]
¡û
>W141266879
CCNC01000143
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
101723
101648
-
Ala
GGC
[ENA]
¡û
>WENV170142833
CENY01030734
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1272
1197
-
Ala
GGC
[ENA]
¢þ
>WENV170144687
CENY01167123
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
685
760
+
Ala
GGC
[ENA]
¢þ
>WENV170224417
CEQE01052436
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
204
+
Ala
GGC
[ENA]
¢þ
>WENV170248275
CEQQ01114290
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
304
229
-
Ala
GGC
[ENA]
¢þ
>WENV170709345
LNFM01000273
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
163238
163313
+
Ala
GGC
[ENA]
¢þ
>WENV170765227
LWDU01035857
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2048
1973
-
Ala
GGC
[ENA]
¢þ
>C191087663
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
288815
288890
+
Ala
GGC
-
¡û
>C191125711
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
1381846
1381771
-
Ala
GGC
-
¡û
>C191125855
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
2938589
2938514
-
Ala
GGC
-
¡û
>W1911242939
NSGD01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
161370
161445
+
Ala
GGC
[ENA]
¡û
>W1911405041
NWQG01000211
Alphaproteobacteria
Mesorhizobium sanjuanii BSA136 [NWQG]
3194
3269
+
Ala
GGC
[ENA]
¡û
>W1911802549
QYUK01000008
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
71969
71894
-
Ala
GGC
[ENA]
¡û
>W1810101790
PGTO01000003
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
344456
344531
+
Ala
GGC
[ENA]
¡û
>C161047981
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
2758510
2758435
-
Ala
GGC
-
¡û
>W1610990890
LWQT01000020
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
135061
134986
-
Ala
GGC
[ENA]
¡û
>W1610990941
LWQU01000104
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
201397
201322
-
Ala
GGC
[ENA]
¡û
>W1611044384
LZTK01000001
Alphaproteobacteria
Mesorhizobium loti [LZTK]
413763
413688
-
Ala
GGC
[ENA]
¡û
>W1710540221
FNWO01000017
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
53471
53396
-
Ala
GGC
[ENA]
¡û
>W1710593782
FRXO01000005
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
228048
228123
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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