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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303461 (80 seq.)
>A171003601
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1543562
1543489
-
Asp
GTC
-
¡û
>A171004949
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3864057
3864130
+
Asp
GTC
-
¡û
>A171004999
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3838874
3838947
+
Asp
GTC
-
¡û
>A171005051
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3921372
3921445
+
Asp
GTC
-
¡û
>A171005105
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3927246
3927319
+
Asp
GTC
-
¡û
>A171005157
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
3939475
3939548
+
Asp
GTC
-
¡û
>A171005370
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1136760
1136834
+
Asp
GTC
-
¡û
>A171005379
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1958480
1958406
-
Asp
GTC
-
¡û
>WENV180345408
OBLN01000044
[OBLN] sediment metagenome; sediment
8840
8766
-
Asp
GTC
[ENA]
¢þ
>WENV170014846
AZIC01000596
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
741
816
+
Asp
GTC
[ENA]
¢þ
>At0999
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1415823
1415751
-
Asp
GTC
[Ensembl]
¡û
>At1539
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1790231
1790159
-
Asp
GTC
[Ensembl]
¡û
>WENV170722589
LSQX01234693
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2997
3070
+
Asp
GTC
[ENA]
¢þ
>W1910226813
FNCA01000002
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
4510
4584
+
Asp
GTC
[ENA]
¡û
>W1910229830
FOHQ01000001
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
264267
264341
+
Asp
GTC
[ENA]
¡û
>W1910230572
FOUJ01000002
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
353894
353821
-
Asp
GTC
[ENA]
¡û
>W1910471822
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
132302
132228
-
Asp
GTC
[ENA]
¡û
>W1910569268
JJOR01000166
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
12329
12402
+
Asp
GTC
[ENA]
¡û
>W1910569310
JJOS01000089
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
12310
12383
+
Asp
GTC
[ENA]
¡û
>W1910569328
JJOT01000009
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
12349
12422
+
Asp
GTC
[ENA]
¡û
>W1910569421
JJOU01000193
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
11969
12042
+
Asp
GTC
[ENA]
¡û
>W1910569692
JJPA01000064
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
12355
12428
+
Asp
GTC
[ENA]
¡û
>W1910569738
JJPB01000014
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
38535
38608
+
Asp
GTC
[ENA]
¡û
>W1910569809
JJPC01000053
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
12376
12449
+
Asp
GTC
[ENA]
¡û
>W1910569853
JJPD01000098
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
20880
20953
+
Asp
GTC
[ENA]
¡û
>W1910569909
JJPE01000067
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
37527
37600
+
Asp
GTC
[ENA]
¡û
>W1910569953
JJPF01000032
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
38535
38608
+
Asp
GTC
[ENA]
¡û
>W1910570003
JJPG01000046
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
37587
37660
+
Asp
GTC
[ENA]
¡û
>W1910570044
JJPH01000014
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
38535
38608
+
Asp
GTC
[ENA]
¡û
>W1910570102
JJPI01000037
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
13431
13504
+
Asp
GTC
[ENA]
¡û
>W1910570151
JJPJ01000034
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
12360
12433
+
Asp
GTC
[ENA]
¡û
>W1910570230
JJPK01000105
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
13431
13504
+
Asp
GTC
[ENA]
¡û
>W1910570289
JJPL01000135
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
12350
12423
+
Asp
GTC
[ENA]
¡û
>W1910570309
JJPM01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
39287
39360
+
Asp
GTC
[ENA]
¡û
>W1910570395
JJPN01000172
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
9925
9852
-
Asp
GTC
[ENA]
¡û
>W1910570413
JJPO01000042
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
10239
10166
-
Asp
GTC
[ENA]
¡û
>W1910570496
JJPP01000154
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
12363
12436
+
Asp
GTC
[ENA]
¡û
>W1910570539
JJPQ01000146
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
38426
38499
+
Asp
GTC
[ENA]
¡û
>W1910570593
JJPR01000140
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
12319
12392
+
Asp
GTC
[ENA]
¡û
>W1910570615
JJPS01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
12330
12403
+
Asp
GTC
[ENA]
¡û
>W1910570683
JJPT01000130
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
24385
24458
+
Asp
GTC
[ENA]
¡û
>W1910570779
JJPV01000067
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
65825
65752
-
Asp
GTC
[ENA]
¡û
>W1910570819
JJPW01000034
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
12360
12433
+
Asp
GTC
[ENA]
¡û
>W1910570853
JJPX01000015
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
12351
12424
+
Asp
GTC
[ENA]
¡û
>W1910570937
JJPY01000093
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
37576
37649
+
Asp
GTC
[ENA]
¡û
>W1910570958
JJPZ01000020
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
9952
9879
-
Asp
GTC
[ENA]
¡û
>W1910571007
JJQA01000016
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
30893
30966
+
Asp
GTC
[ENA]
¡û
>W1910571078
JJQB01000088
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
20892
20965
+
Asp
GTC
[ENA]
¡û
>W1910571141
JJQC01000131
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
30888
30961
+
Asp
GTC
[ENA]
¡û
>W1910571193
JJQD01000158
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
97716
97789
+
Asp
GTC
[ENA]
¡û
>W1910571205
JJQE01000026
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
9956
9883
-
Asp
GTC
[ENA]
¡û
>W1910571351
JJQG01000149
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
9953
9880
-
Asp
GTC
[ENA]
¡û
>W1910571364
JJQH01000051
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
12417
12490
+
Asp
GTC
[ENA]
¡û
>W1910571441
JJQI01000090
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
37576
37649
+
Asp
GTC
[ENA]
¡û
>W1910571465
JJQJ01000069
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
13441
13514
+
Asp
GTC
[ENA]
¡û
>W1910571539
JJQK01000214
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
9969
9896
-
Asp
GTC
[ENA]
¡û
>W1910571672
JJQM01000164
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
12342
12415
+
Asp
GTC
[ENA]
¡û
>W1910571700
JJQN01000071
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
4474
4401
-
Asp
GTC
[ENA]
¡û
>W1910571758
JJQO01000090
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
12573
12646
+
Asp
GTC
[ENA]
¡û
>W1910571814
JJQP01000132
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
12302
12375
+
Asp
GTC
[ENA]
¡û
>W1910571871
JJQQ01000068
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
13431
13504
+
Asp
GTC
[ENA]
¡û
>W1910571903
JJQR01000004
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
12343
12416
+
Asp
GTC
[ENA]
¡û
>W1910571999
JJQS01000155
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
12349
12422
+
Asp
GTC
[ENA]
¡û
>W1910572015
JJQT01000068
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
12349
12422
+
Asp
GTC
[ENA]
¡û
>W1910572122
JJQV01000050
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
12362
12435
+
Asp
GTC
[ENA]
¡û
>W1910572181
JJQW01000092
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
12330
12403
+
Asp
GTC
[ENA]
¡û
>W1910572211
JJQX01000038
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
13431
13504
+
Asp
GTC
[ENA]
¡û
>W1910572328
JJQZ01000117
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
12352
12425
+
Asp
GTC
[ENA]
¡û
>W1910572392
JJRA01000135
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
12359
12432
+
Asp
GTC
[ENA]
¡û
>W1910572440
JJRB01000129
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
12391
12464
+
Asp
GTC
[ENA]
¡û
>W1910575073
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1117243
1117170
-
Asp
GTC
[ENA]
¡û
>W1910575272
JRHO01000013
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
166046
166120
+
Asp
GTC
[ENA]
¡û
>W1910575282
JRHO01000014
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
517903
517829
-
Asp
GTC
[ENA]
¡û
>W1910661847
MBKP01000006
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
79245
79171
-
Asp
GTC
[ENA]
¡û
>W1911581829
PGGK01000011
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
59630
59704
+
Asp
GTC
[ENA]
¡û
>W1610000157
AADH02000017
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
37015
36941
-
Asp
GTC
[ENA]
¡û
>W1610032613
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1334580
1334506
-
Asp
GTC
[ENA]
¡û
>W1610045105
BBBC01000038
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
12312
12385
+
Asp
GTC
[ENA]
¡û
>W1610670248
LKAZ01000036
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
84630
84704
+
Asp
GTC
[ENA]
¡û
>W1610919896
LSRV01000008
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
7131
7205
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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