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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303547 (18 seq.)
>W1711229630
LXYP01000036
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
17486
17561
+
Phe
GAA
[ENA]
¡û
>w018754
AATP01000001
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
418306
418229
-
Phe
GAA
[ENA]
¡û
>WENV182544005
OJBD01011520
[OJBD] seawater metagenome; Sea water
132
57
-
Phe
GAA
[ENA]
¢þ
>WENV182557758
OJDK01007876
[OJDK] seawater metagenome; Sea water
769
694
-
Phe
GAA
[ENA]
¢þ
>WENV170668188
LADL02001719
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
20837
20912
+
Phe
GAA
[ENA]
¢þ
>C181062145
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
3155353
3155428
+
Phe
GAA
-
¡û
>C181068254
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
2052953
2053028
+
Phe
GAA
-
¡û
>C181220375
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
1106001
1105926
-
Phe
GAA
-
¡û
>C191166431
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
1218150
1218225
+
Phe
GAA
-
¡û
>C191166489
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
1174748
1174823
+
Phe
GAA
-
¡û
>W1911532509
OGVD01000002
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
548437
548512
+
Phe
GAA
[ENA]
¡û
>W1810889049
QURL01000001
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
349050
349125
+
Phe
GAA
[ENA]
¡û
>C161073971
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
2740067
2739992
-
Phe
GAA
[Ensembl]
¡û
>W1610056800
BBWO01000001
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
227321
227246
-
Phe
GAA
[ENA]
¡û
>W1611013500
LXYP01000036
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
17486
17561
+
Phe
GAA
[ENA]
¡û
>WENV078513
AAGA01025781
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
322
399
+
Phe
GAA
[ENA]
>W1710053499
BBWO01000001
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
227321
227246
-
Phe
GAA
[ENA]
¡û
>W1710593897
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1719288
1719363
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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