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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303566 (17 seq.)
>A171002733
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
230808
230883
+
Gln
CTG
-
¡û
>A171003022
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1175105
1175030
-
Gln
CTG
-
¡û
>A171004728
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
2122443
2122515
+
Gln
CTG
-
¡û
>A173000226
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1177086
1177011
-
Gln
CTG
-
¡û
>WENV180345661
OBLN01002075
[OBLN] sediment metagenome; sediment
5443
5518
+
Gln
CTG
[ENA]
¢þ
>WENV170006383
AMWB02019764
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
79
4
-
Gln
CTG
[ENA]
¢þ
>At0964
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
552565
552640
+
Gln
CTG
[Ensembl]
¡û
>WENV170671778
LAHU01164474
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
233
158
-
Gln
CTG
[ENA]
¢þ
>W1910226835
FNCA01000006
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
218678
218752
+
Gln
CTG
[ENA]
¡û
>W1910229850
FOHQ01000003
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
190289
190214
-
Gln
CTG
[ENA]
¡û
>W1910230566
FOUJ01000001
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
866683
866608
-
Gln
CTG
[ENA]
¡û
>W1910661880
MBKP01000064
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
7069
6996
-
Gln
CTG
[ENA]
¡û
>W1910783577
MPPA01000031
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
122195
122121
-
Gln
CTG
[ENA]
¡û
>W1911581817
PGGK01000005
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
14747
14820
+
Gln
CTG
[ENA]
¡û
>W1610000119
AADH02000001
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
284633
284708
+
Gln
CTG
[ENA]
¡û
>W1610032602
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
3097564
3097489
-
Gln
CTG
[ENA]
¡û
>W1630017677
LSRV01000089
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
3198
3123
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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