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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303568 (12 seq.)
>A171000722
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
372944
373016
+
Gln
TTG
-
¡û
>A171002701
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1229529
1229602
+
Gln
TTG
-
¡û
>A171006154
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
756699
756771
+
Gln
TTG
-
¡û
>A171006690
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
949285
949357
+
Gln
TTG
-
¡û
>A171007226
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
534436
534508
+
Gln
TTG
-
¡û
>A178000563
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
777565
777669
+
Gln
TTG
-
¡û
>WENV170660033
JXWS01098248
[JXWS] soil metagenome; rice field; elevated CO2
185
257
+
Gln
TTG
[ENA]
¢þ
>WENV170702878
LKMJ01004452
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9602
9530
-
Gln
TTG
[ENA]
¢þ
>WENV170703106
LKMJ01006659
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6575
6647
+
Gln
TTG
[ENA]
¢þ
>W1610000832
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
1102014
1102086
+
Gln
TTG
[ENA]
¡û
>W1610003250
AFNT02000001
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
8033
7961
-
Gln
TTG
[ENA]
¡û
>W1610012629
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
326953
326881
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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