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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303708 (46 seq.)
>W1711642996
MPZT01000011
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
3651
3576
-
Ala
TGC
[ENA]
¡û
>W1711643176
MPZX01000005
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
3655
3580
-
Ala
TGC
[ENA]
¡û
>W1711947224
NBNX01000020
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
1874
1949
+
Ala
TGC
[ENA]
¡û
>W1711959026
NBXF01000035
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
3702
3627
-
Ala
TGC
[ENA]
¡û
>C171094334
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
531068
531143
+
Ala
TGC
-
¡û
>C171094365
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
2773814
2773739
-
Ala
TGC
-
¡û
>C171094379
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
43141
43066
-
Ala
TGC
-
¡û
>WENV180361009
OBNU01085398
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
330
255
-
Ala
TGC
[ENA]
¢þ
>WENV181188238
OEOE01054393
[OEOE] activated sludge metagenome; Activated Sludge
43
118
+
Ala
TGC
[ENA]
¢þ
>WENV181369978
OFQR01004229
[OFQR] freshwater metagenome; Freshwater Lake
819
744
-
Ala
TGC
[ENA]
¢þ
>WENV181370411
OFQS01009306
[OFQS] freshwater metagenome; Freshwater Lake
22
97
+
Ala
TGC
[ENA]
¢þ
>WENV181370629
OFQT01001246
[OFQT] freshwater metagenome; Freshwater Lake
1999
2074
+
Ala
TGC
[ENA]
¢þ
>WENV181415529
OGCL01013632
[OGCL] hot springs metagenome; Hot spring water
702
626
-
Ala
TGC
[ENA]
¢þ
>WENV181843792
OGVU01064747
[OGVU] freshwater metagenome; freshwater
386
311
-
Ala
TGC
[ENA]
¢þ
>W141191700
AYPY01000008
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
737
662
-
Ala
TGC
[ENA]
¡û
>W141191735
AYPY01000040
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
335
410
+
Ala
TGC
[ENA]
¡û
>W141191808
AYQA01000031
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
1903
1978
+
Ala
TGC
[ENA]
¡û
>W141237277
BBJC01000001
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
844323
844398
+
Ala
TGC
[ENA]
¡û
>W141241708
CAHM01000321
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
22650
22575
-
Ala
TGC
[ENA]
¡û
>W141284837
JAME01000086
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
2225
2300
+
Ala
TGC
[ENA]
¡û
>WENV183744397
PJUK01016421
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
231
156
-
Ala
TGC
[ENA]
¢þ
>WENV170015931
AZIJ01004592
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
74
149
+
Ala
TGC
[ENA]
¢þ
>WENV170016075
AZIJ01011748
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
206
131
-
Ala
TGC
[ENA]
¢þ
>WENV170020603
BBPE01014001
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1294
1219
-
Ala
TGC
[ENA]
¢þ
>WENV170657048
JTFO01072297
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
256
181
-
Ala
TGC
[ENA]
¢þ
>WENV170705320
LLEQ01008484
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
284
359
+
Ala
TGC
[ENA]
¢þ
>WENV170705370
LLEQ01025264
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
130
55
-
Ala
TGC
[ENA]
¢þ
>C181044788
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
2470119
2470194
+
Ala
TGC
-
¡û
>C181044796
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
3216907
3216982
+
Ala
TGC
-
¡û
>W1910442959
FWFQ01000052
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
2018
2093
+
Ala
TGC
[ENA]
¡û
>W1911787321
QXXQ01000038
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
3707
3632
-
Ala
TGC
[ENA]
¡û
>W1810535455
QDDR01000027
Alphaproteobacteria
Pararhodobacter aggregans D1-19 [QDDR]
1986
2061
+
Ala
TGC
[ENA]
¡û
>W1810584006
QEYD01000020
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
2008
2083
+
Ala
TGC
[ENA]
¡û
>W1810672443
QJTK01000037
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
1992
2067
+
Ala
TGC
[ENA]
¡û
>W1810707403
QNHG01000012
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
2165
2240
+
Ala
TGC
[ENA]
¡û
>C10110596
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
161946
162021
+
Ala
TGC
[Ensembl]
¡û
>C10110603
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
1005712
1005787
+
Ala
TGC
[Ensembl]
¡û
>C10110608
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
1515736
1515811
+
Ala
TGC
[Ensembl]
¡û
>C10110626
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
3580497
3580422
-
Ala
TGC
[Ensembl]
¡û
>ENV003031
AY962315
Environmental sample from ENV division of INSDC
1044
1119
+
Ala
TGC
[ENA]
>W1710535226
FNSK01000001
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
383800
383875
+
Ala
TGC
[ENA]
¡û
>W1710535251
FNSK01000001
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
2821250
2821175
-
Ala
TGC
[ENA]
¡û
>W1710535272
FNSK01000002
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
401600
401525
-
Ala
TGC
[ENA]
¡û
>W1710535275
FNSK01000003
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
79372
79447
+
Ala
TGC
[ENA]
¡û
>W1710570341
FOVB01000039
Alphaproteobacteria
Thioclava dalianensis [FOVB]
1312
1387
+
Ala
TGC
[ENA]
¡û
>W1710599516
FTOT01000028
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
1983
2058
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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