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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303732 (39 seq.)
>W131059270
ANGH02000168
Gammaproteobacteria
Klebsiella pneumoniae JHCK1 [ANGH]
5694
5769
+
Thr
TGT
[ENA]
¡û
>W1711735800
MTZP01000144
Gammaproteobacteria
Klebsiella aerogenes [MTZP]
2910
2835
-
Thr
TGT
[ENA]
¡û
>C171001620
CP008886
Gammaproteobacteria
Raoultella ornithinolytica A14 [CP008886]
1729322
1729397
+
Thr
TGT
-
¡û
>C171070200
CP017928
Gammaproteobacteria
Klebsiella oxytoca CAV1015 [CP017928]
2080524
2080449
-
Thr
TGT
-
¡û
>C171113440
CP020841
Gammaproteobacteria
Klebsiella pneumoniae KPN1482 [CP020841]
260554
260629
+
Thr
TGT
-
¡û
>WENV180452681
OBXK01000120
[OBXK] human gut metagenome; faeces
23942
23867
-
Thr
TGT
[ENA]
¢þ
>WENV181326725
OFLN01000010
[OFLN] metagenome; faeces
173950
174025
+
Thr
TGT
[ENA]
¢þ
>WENV182399644
OIEO01000028
[OIEO] human gut metagenome; human gut
347
272
-
Thr
TGT
[ENA]
¢þ
>WENV182836624
OKFY01000071
[OKFY] human gut metagenome; human gut
31122
31197
+
Thr
TGT
[ENA]
¢þ
>WENV182837180
OKGE01002389
[OKGE] human gut metagenome; human gut
975
900
-
Thr
TGT
[ENA]
¢þ
>WENV182947444
OKVM01000495
[OKVM] human gut metagenome; human gut
297
222
-
Thr
TGT
[ENA]
¢þ
>WENV182948465
OKVO01001113
[OKVO] human gut metagenome; human gut
522
597
+
Thr
TGT
[ENA]
¢þ
>WENV182953664
OKVZ01000048
[OKVZ] human gut metagenome; human gut
453
378
-
Thr
TGT
[ENA]
¢þ
>WENV170023354
BCQK01238195
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
12
87
+
Thr
TGT
[ENA]
¢þ
>C181077125
CP023185
Gammaproteobacteria
Klebsiella michiganensis K518 [CP023185]
1091489
1091414
-
Thr
TGT
-
¡û
>C181195469
CP031101
Gammaproteobacteria
Leclercia sp. W17 w17 [CP031101]
3875890
3875815
-
Thr
TGT
-
¡û
>W1910449014
FWIT01000013
Gammaproteobacteria
Klebsiella pneumoniae VRCO0118 [FWIT]
28852
28777
-
Thr
TGT
[ENA]
¡û
>W1910860944
NCLS01000028
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn13 [NCLS]
321463
321388
-
Thr
TGT
[ENA]
¡û
>W1911177629
NQLL01000056
Gammaproteobacteria
Klebsiella pneumoniae NU-CRE265 [NQLL]
1392
1317
-
Thr
TGT
[ENA]
¡û
>W1911549390
OVDX01000004
Gammaproteobacteria
Klebsiella michiganensis KCRI-40 [OVDX]
41540
41615
+
Thr
TGT
[ENA]
¡û
>W1810093737
PGIL01000004
Gammaproteobacteria
Klebsiella michiganensis YDC736-2 [PGIL]
182589
182514
-
Thr
TGT
[ENA]
¡û
>W1810129746
PIBN01000004
Gammaproteobacteria
Klebsiella sp. K-Nf6 [PIBN]
175775
175850
+
Thr
TGT
[ENA]
¡û
>W1810535505
QDDS01000024
Gammaproteobacteria
Klebsiella michiganensis IS1015-72 [QDDS]
27717
27642
-
Thr
TGT
[ENA]
¡û
>C151085124
CP011597
Gammaproteobacteria
Klebsiella oxytoca CAV1099 [CP011597]
6090160
6090235
+
Thr
TGT
[Ensembl]
¡û
>C151085375
CP011618
Gammaproteobacteria
Klebsiella oxytoca CAV1335 [CP011618]
6121726
6121801
+
Thr
TGT
[Ensembl]
¡û
>W1511389433
JSWW01000008
Gammaproteobacteria
Klebsiella michiganensis CH2 [JSWW]
125706
125781
+
Thr
TGT
[ENA]
¡û
>W1511442614
JURX01000181
Gammaproteobacteria
Raoultella ornithinolytica 811_RORN [JURX]
36305
36230
-
Thr
TGT
[ENA]
¡û
>W1511447477
JUYQ01000006
Gammaproteobacteria
Klebsiella michiganensis 649_KOXY [JUYQ]
50143
50068
-
Thr
TGT
[ENA]
¡û
>W1511477327
JWFZ01000153
Gammaproteobacteria
Klebsiella aerogenes 1020_EAER [JWFZ]
11460
11535
+
Thr
TGT
[ENA]
¡û
>W1511477376
JWGB01000139
Gammaproteobacteria
Klebsiella aerogenes 1019_EAER [JWGB]
7463
7538
+
Thr
TGT
[ENA]
¡û
>W1511662463
LEUS01000001
Gammaproteobacteria
Klebsiella michiganensis MGH87 [LEUS]
376983
377058
+
Thr
TGT
[ENA]
¡û
>W1511686587
LFUC01000026
Gammaproteobacteria
Klebsiella michiganensis CH5 [LFUC]
14403
14328
-
Thr
TGT
[ENA]
¡û
>C121015111
CP003683
Gammaproteobacteria
Klebsiella michiganensis E718 [CP003683]
1477629
1477704
+
Thr
TGT
[Ensembl]
¡û
>W121112530
ALNJ01000037
Gammaproteobacteria
Klebsiella sp. OBRC7 [ALNJ]
56799
56724
-
Thr
TGT
[ENA]
¡û
>W1610482879
FLAF01000031
Gammaproteobacteria
Klebsiella oxytoca [FLAF]
43443
43368
-
Thr
TGT
[ENA]
¡û
>W1610499930
FLJJ01000039
Gammaproteobacteria
Klebsiella pneumoniae [FLJJ]
28594
28519
-
Thr
TGT
[ENA]
¡û
>W1610513766
FLXY01000008
Gammaproteobacteria
Klebsiella pneumoniae PB86 [FLXY]
195152
195227
+
Thr
TGT
[ENA]
¡û
>W1710480559
FLAF01000031
Gammaproteobacteria
Klebsiella oxytoca [FLAF]
43443
43368
-
Thr
TGT
[ENA]
¡û
>W1710493400
FLJJ01000039
Gammaproteobacteria
Klebsiella pneumoniae [FLJJ]
28594
28519
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK