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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303770 (20 seq.)
>W1711421808
MHZV01000134
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_19 [MHZV]
26112
26036
-
Arg
ACG
[ENA]
¡û
>W1711421817
MHZW01000036
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_20 [MHZW]
4233
4309
+
Arg
ACG
[ENA]
¡û
>C001385
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
340005
339929
-
Arg
ACG
[Ensembl]
¡û
>WENV180371068
OBOI01000250
[OBOI] sediment metagenome; sediment
19434
19510
+
Arg
ACG
[ENA]
¢þ
>WENV181189712
OEOF01169228
[OEOF] activated sludge metagenome; Activated Sludge
174
98
-
Arg
ACG
[ENA]
¢þ
>WENV183670481
ORJL010949752
[ORJL] groundwater metagenome; groundwater
101
25
-
Arg
ACG
[ENA]
¢þ
>WENV183671261
ORJL011040291
[ORJL] groundwater metagenome; groundwater
2
78
+
Arg
ACG
[ENA]
¢þ
>WENV183671729
ORJL011092630
[ORJL] groundwater metagenome; groundwater
13232
13156
-
Arg
ACG
[ENA]
¢þ
>WENV183672622
ORJL011192847
[ORJL] groundwater metagenome; groundwater
3132
3056
-
Arg
ACG
[ENA]
¢þ
>WENV183696213
ORMF012522046
[ORMF] groundwater metagenome; groundwater
375
451
+
Arg
ACG
[ENA]
¢þ
>WENV170554215
CXWK01054289
[CXWK] wastewater metagenome; activated sludge
1549
1625
+
Arg
ACG
[ENA]
¢þ
>WENV170713856
LNFM01044626
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3107
3031
-
Arg
ACG
[ENA]
¢þ
>W1910128403
BHVV01000008
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
380969
380893
-
Arg
ACG
[ENA]
¡û
>W1910744085
MHZX01000092
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
47766
47690
-
Arg
ACG
[ENA]
¡û
>C151000936
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
808959
808883
-
Arg
ACG
[Ensembl]
¡û
>C151076202
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
3446762
3446686
-
Arg
ACG
-
¡û
>W1511581006
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
370016
369940
-
Arg
ACG
[ENA]
¡û
>C131000324
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3570087
3570011
-
Arg
ACG
[Ensembl]
¡û
>C131000325
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3569877
3569801
-
Arg
ACG
[Ensembl]
¡û
>W1710595723
FTMD01000003
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
239494
239418
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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