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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303819 (62 seq.)
>W1711346057
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
3567938
3567865
-
Ala
GGC
[ENA]
¡û
>W1712061761
NGFP01000125
Actinomycetota
Streptosporangium minutum M26 [NGFP]
23556
23483
-
Ala
GGC
[ENA]
¡û
>W1712061762
NGFP01000125
Actinomycetota
Streptosporangium minutum M26 [NGFP]
5354
5281
-
Ala
GGC
[ENA]
¡û
>W1712061775
NGFP01000245
Actinomycetota
Streptosporangium minutum M26 [NGFP]
11736
11809
+
Ala
GGC
[ENA]
¡û
>C171066442
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
12750314
12750387
+
Ala
GGC
-
¡û
>C171066443
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
12774296
12774371
+
Ala
GGC
-
¡û
>C171066444
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
12811563
12811638
+
Ala
GGC
-
¡û
>W131055045
ANBE01000032
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
124151
124078
-
Ala
GGC
[ENA]
¡û
>W131165783
ARBV01000058
Actinomycetota
Nonomuraea coxensis DSM 45129 [ARBV]
17405
17330
-
Ala
GGC
[ENA]
¡û
>W131165784
ARBV01000058
Actinomycetota
Nonomuraea coxensis DSM 45129 [ARBV]
4095
4020
-
Ala
GGC
[ENA]
¡û
>C191151555
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
4133224
4133151
-
Ala
GGC
-
¡û
>W141767414
JOEP01000024
Actinomycetota
Streptosporangium roseum [JOEP]
175572
175499
-
Ala
GGC
[ENA]
¡û
>W141767415
JOEP01000024
Actinomycetota
Streptosporangium roseum [JOEP]
157343
157270
-
Ala
GGC
[ENA]
¡û
>W141767416
JOEP01000024
Actinomycetota
Streptosporangium roseum [JOEP]
132848
132775
-
Ala
GGC
[ENA]
¡û
>W141767477
JOEQ01000027
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
162574
162501
-
Ala
GGC
[ENA]
¡û
>W141767489
JOEQ01000047
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
16494
16419
-
Ala
GGC
[ENA]
¡û
>W141767490
JOEQ01000047
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
7938
7865
-
Ala
GGC
[ENA]
¡û
>W09110046
ABUU01000080
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
27906
27833
-
Ala
GGC
[ENA]
¡û
>W09110055
ABUU01000093
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
33518
33445
-
Ala
GGC
[ENA]
¡û
>W09110056
ABUU01000093
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
17337
17264
-
Ala
GGC
[ENA]
¡û
>W1910285469
FRFF01000140
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
44650
44723
+
Ala
GGC
[ENA]
¡û
>W1910285470
FRFF01000140
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
59023
59096
+
Ala
GGC
[ENA]
¡û
>W1910285471
FRFF01000140
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
60854
60927
+
Ala
GGC
[ENA]
¡û
>W1910547870
FZOD01000011
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
29328
29401
+
Ala
GGC
[ENA]
¡û
>W1910547871
FZOD01000011
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
39062
39135
+
Ala
GGC
[ENA]
¡û
>W1910547872
FZOD01000011
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
58733
58806
+
Ala
GGC
[ENA]
¡û
>W1911541298
OOHJ01000013
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
20490
20564
+
Ala
GGC
[ENA]
¡û
>W1911541299
OOHJ01000013
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
57755
57829
+
Ala
GGC
[ENA]
¡û
>W1911541354
OOHJ01000018
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
2690
2617
-
Ala
GGC
[ENA]
¡û
>W1810368721
PVZV01000004
Actinomycetota
Actinocorallia populi A251 [PVZV]
745593
745666
+
Ala
GGC
[ENA]
¡û
>W1810368722
PVZV01000004
Actinomycetota
Actinocorallia populi A251 [PVZV]
746853
746926
+
Ala
GGC
[ENA]
¡û
>W1810698117
QLYX01000026
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
70528
70601
+
Ala
GGC
[ENA]
¡û
>W1810698118
QLYX01000026
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
71723
71796
+
Ala
GGC
[ENA]
¡û
>W1810707272
QNFZ01000125
Actinomycetota
Nonomuraea lactucae NEAU-YG30 [QNFZ]
58496
58423
-
Ala
GGC
[ENA]
¡û
>W1810707273
QNFZ01000125
Actinomycetota
Nonomuraea lactucae NEAU-YG30 [QNFZ]
24054
23981
-
Ala
GGC
[ENA]
¡û
>W1810735343
QOIL01000023
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
31034
31107
+
Ala
GGC
[ENA]
¡û
>W1810735344
QOIL01000023
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
53546
53620
+
Ala
GGC
[ENA]
¡û
>W1810735345
QOIL01000023
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
63681
63754
+
Ala
GGC
[ENA]
¡û
>ENV09003620
ADGO01108162
Compost metagenome contig00001
322
249
-
Ala
GGC
[ENA]
¡û
>C10112444
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
8008634
8008561
-
Ala
GGC
[Ensembl]
¡û
>C10112445
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
7992454
7992381
-
Ala
GGC
[Ensembl]
¡û
>C10112446
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
7961096
7961023
-
Ala
GGC
[Ensembl]
¡û
>W1511352757
JROO01000028
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
25834
25909
+
Ala
GGC
[ENA]
¡û
>W1511352758
JROO01000028
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
27521
27596
+
Ala
GGC
[ENA]
¡û
>W1511352759
JROO01000028
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
31658
31733
+
Ala
GGC
[ENA]
¡û
>W1511568502
LAJC01000012
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
90609
90536
-
Ala
GGC
[ENA]
¡û
>W1610057844
BBZG01000003
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
1012464
1012389
-
Ala
GGC
[ENA]
¡û
>W1610081001
BDCX01000009
Actinomycetota
Planomonospora sphaerica [BDCX]
337168
337093
-
Ala
GGC
[ENA]
¡û
>W1610081002
BDCX01000009
Actinomycetota
Planomonospora sphaerica [BDCX]
325966
325891
-
Ala
GGC
[ENA]
¡û
>W1610081003
BDCX01000009
Actinomycetota
Planomonospora sphaerica [BDCX]
309265
309190
-
Ala
GGC
[ENA]
¡û
>W1710054543
BBZG01000003
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
1012464
1012389
-
Ala
GGC
[ENA]
¡û
>W1710079652
BDCX01000009
Actinomycetota
Planomonospora sphaerica [BDCX]
337168
337093
-
Ala
GGC
[ENA]
¡û
>W1710079653
BDCX01000009
Actinomycetota
Planomonospora sphaerica [BDCX]
325966
325891
-
Ala
GGC
[ENA]
¡û
>W1710079654
BDCX01000009
Actinomycetota
Planomonospora sphaerica [BDCX]
309265
309190
-
Ala
GGC
[ENA]
¡û
>W1710517534
FNDJ01000040
Actinomycetota
Nonomuraea jiangxiensis [FNDJ]
60007
59932
-
Ala
GGC
[ENA]
¡û
>W1710526567
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
5743130
5743057
-
Ala
GGC
[ENA]
¡û
>W1710545082
FOBF01000014
Actinomycetota
Nonomuraea pusilla [FOBF]
206575
206500
-
Ala
GGC
[ENA]
¡û
>W1710553824
FOHX01000025
Actinomycetota
Nonomuraea wenchangensis [FOHX]
105019
104944
-
Ala
GGC
[ENA]
¡û
>W1710553825
FOHX01000025
Actinomycetota
Nonomuraea wenchangensis [FOHX]
89370
89295
-
Ala
GGC
[ENA]
¡û
>W1710565061
FOQY01000021
Actinomycetota
Streptosporangium canum [FOQY]
27932
28005
+
Ala
GGC
[ENA]
¡û
>W1710565062
FOQY01000021
Actinomycetota
Streptosporangium canum [FOQY]
45007
45080
+
Ala
GGC
[ENA]
¡û
>W1710565063
FOQY01000021
Actinomycetota
Streptosporangium canum [FOQY]
80849
80924
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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