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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303839 (27 seq.)
>W1711293916
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
276931
277006
+
Thr
GGT
[ENA]
¡û
>W1711294003
LZZA01000138
Bacillota
Clostridium saccharobutylicum [LZZA]
27539
27614
+
Thr
GGT
[ENA]
¡û
>C171045576
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
201017
201092
+
Thr
GGT
-
¡û
>C171045727
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
201017
201092
+
Thr
GGT
-
¡û
>C171045896
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
212684
212759
+
Thr
GGT
-
¡û
>C171045981
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
201017
201092
+
Thr
GGT
-
¡û
>WENV180121432
OASR01001269
[OASR] human gut metagenome; faeces
36
111
+
Thr
GGT
[ENA]
¢þ
>WENV180124068
OASX01001636
[OASX] human gut metagenome; faeces
6156
6231
+
Thr
GGT
[ENA]
¢þ
>WENV180129294
OATC01000343
[OATC] human gut metagenome; faeces
11851
11926
+
Thr
GGT
[ENA]
¢þ
>WENV180144426
OAUA01009159
[OAUA] human gut metagenome; faeces
732
657
-
Thr
GGT
[ENA]
¢þ
>WENV180170975
OAVV01009012
[OAVV] human gut metagenome; faeces
39
114
+
Thr
GGT
[ENA]
¢þ
>WENV180431249
OBWG01009928
[OBWG] human gut metagenome; faeces
1132
1057
-
Thr
GGT
[ENA]
¢þ
>WENV180444269
OBWZ01000436
[OBWZ] human gut metagenome; faeces
74
149
+
Thr
GGT
[ENA]
¢þ
>WENV180504931
OCAO01000235
[OCAO] human gut metagenome; faeces
13634
13709
+
Thr
GGT
[ENA]
¢þ
>WENV180506792
OCAS01009879
[OCAS] human gut metagenome; faeces
1153
1078
-
Thr
GGT
[ENA]
¢þ
>WENV182601946
OJJJ01001874
[OJJJ] metagenome; faeces
1999
2074
+
Thr
GGT
[ENA]
¢þ
>WENV182617366
OJKD01002297
[OJKD] metagenome; faeces
222
297
+
Thr
GGT
[ENA]
¢þ
>WENV182618593
OJKF01000933
[OJKF] metagenome; faeces
2037
1962
-
Thr
GGT
[ENA]
¢þ
>WENV182823420
OKBT01001304
[OKBT] human gut metagenome; human gut
1504
1429
-
Thr
GGT
[ENA]
¢þ
>WENV182835022
OKFJ01001154
[OKFJ] human gut metagenome; human gut
1401
1326
-
Thr
GGT
[ENA]
¢þ
>WENV182865623
OKQK01002803
[OKQK] human gut metagenome; human gut
172
97
-
Thr
GGT
[ENA]
¢þ
>C141007588
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
201017
201092
+
Thr
GGT
[Ensembl]
¡û
>W1810052432
PDCI01000006
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
226684
226609
-
Thr
GGT
[ENA]
¡û
>W1810052523
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
289002
288927
-
Thr
GGT
[ENA]
¡û
>W1610030617
AYXL01000187
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
33855
33780
-
Thr
GGT
[ENA]
¡û
>WENV082968
BAAW01016331
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
344
269
-
Thr
GGT
[ENA]
>W1710027740
AYXL01000187
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
33855
33780
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK