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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303871 (66 seq.)
>W1710777596
LJBS01000029
Bacillota
Pediococcus acidilactici [LJBS]
15227
15153
-
Glu
CTC
[ENA]
¡û
>W1710915779
LNUM01000011
Bacillota
Pediococcus acidilactici [LNUM]
15784
15858
+
Glu
CTC
[ENA]
¡û
>W1711005318
LQNM01000019
Bacillota
Pediococcus pentosaceus [LQNM]
11923
11997
+
Glu
CTC
[ENA]
¡û
>W1711005570
LQNQ01000009
Bacillota
Pediococcus acidilactici [LQNQ]
120300
120374
+
Glu
CTC
[ENA]
¡û
>W1711005632
LQNR01000045
Bacillota
Pediococcus acidilactici [LQNR]
237
311
+
Glu
CTC
[ENA]
¡û
>W1711025273
LRBW01000016
Bacillota
Pediococcus acidilactici [LRBW]
120258
120332
+
Glu
CTC
[ENA]
¡û
>W1711068920
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
115142
115216
+
Glu
CTC
[ENA]
¡û
>W131146233
AQGT01000003
Bacillota
Pediococcus acidilactici D3 [AQGT]
183585
183659
+
Glu
CTC
[ENA]
¡û
>W1711166893
LVVN01000031
Bacillota
Weissella halotolerans [LVVN]
5842
5916
+
Glu
CTC
[ENA]
¡û
>W1711258427
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
195956
195882
-
Glu
CTC
[ENA]
¡û
>W131239167
BANK01000002
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
84551
84477
-
Glu
CTC
[ENA]
¡û
>W1711585792
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
216711
216637
-
Glu
CTC
[ENA]
¡û
>C171034285
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
1497219
1497293
+
Glu
CTC
-
¡û
>C171034342
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
1495013
1495087
+
Glu
CTC
-
¡û
>C171036771
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
758376
758450
+
Glu
CTC
-
¡û
>C171083281
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1485347
1485421
+
Glu
CTC
-
¡û
>C171119496
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
503655
503581
-
Glu
CTC
-
¡û
>C171119588
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1467120
1467194
+
Glu
CTC
-
¡û
>C171120448
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1467129
1467203
+
Glu
CTC
-
¡û
>C171126513
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
493010
492936
-
Glu
CTC
-
¡û
>C017428
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1330717
1330789
+
Glu
CTC
[Ensembl]
¡û
>WENV180279517
OBHX01044491
[OBHX] metagenome; feces
902
976
+
Glu
CTC
[ENA]
¢þ
>WENV180333833
OBLF01002334
[OBLF] metagenome; feces
5635
5709
+
Glu
CTC
[ENA]
¢þ
>W141241968
CAHU01000007
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
14922
14848
-
Glu
CTC
[ENA]
¡û
>W141280139
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1574815
1574741
-
Glu
CTC
[ENA]
¡û
>WENV183563761
OOBX01011051
[OOBX] human gut metagenome; human gut
98
24
-
Glu
CTC
[ENA]
¢þ
>WENV183762492
PPYE01276137
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
9723
9649
-
Glu
CTC
[ENA]
¢þ
>WENV183769040
PPYE01412605
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
440
366
-
Glu
CTC
[ENA]
¢þ
>WENV170659158
JXWR01000854
[JXWR] soil metagenome; rice field; ambient CO2
40133
40207
+
Glu
CTC
[ENA]
¢þ
>C181042761
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
580939
581013
+
Glu
CTC
-
¡û
>C191023239
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1251356
1251430
+
Glu
CTC
-
¡û
>C191035346
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1406458
1406532
+
Glu
CTC
-
¡û
>C191106228
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
660172
660098
-
Glu
CTC
-
¡û
>C191135584
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1306828
1306902
+
Glu
CTC
-
¡û
>C191135641
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1430025
1430099
+
Glu
CTC
-
¡û
>C191137830
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
544883
544809
-
Glu
CTC
-
¡û
>W09101450
AAEV01000001
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
115657
115731
+
Glu
CTC
[ENA]
¡û
>W1910181659
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
15601
15675
+
Glu
CTC
[ENA]
¡û
>W1910373925
FUHV01000006
Bacillota
Pediococcus acidilactici S7 [FUHV]
118751
118825
+
Glu
CTC
[ENA]
¡û
>C141009499
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1294686
1294760
+
Glu
CTC
[Ensembl]
¡û
>W1911631295
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
180993
180919
-
Glu
CTC
[ENA]
¡û
>W1911696864
QNGC01000017
Bacillota
Pediococcus acidilactici GS1 [QNGC]
19217
19143
-
Glu
CTC
[ENA]
¡û
>W1911798457
QYRQ01000011
Bacillota
Pediococcus acidilactici WT [QYRQ]
86140
86214
+
Glu
CTC
[ENA]
¡û
>W1810000841
BEWQ01000005
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
136786
136712
-
Glu
CTC
[ENA]
¡û
>W1810049836
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
232568
232494
-
Glu
CTC
[ENA]
¡û
>W10105139
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
120187
120261
+
Glu
CTC
[ENA]
¡û
>W11107459
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
120187
120261
+
Glu
CTC
[ENA]
¡û
>C121006602
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
647265
647339
+
Glu
CTC
[Ensembl]
¡û
>C161092361
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
741107
741033
-
Glu
CTC
[Ensembl]
¡û
>W121011499
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
122846
122920
+
Glu
CTC
[ENA]
¡û
>W1610057799
BBZC01000018
Bacillota
Pediococcus pentosaceus [BBZC]
94675
94749
+
Glu
CTC
[ENA]
¡û
>W1610528252
JQBB01000007
Bacillota
Pediococcus claussenii [JQBB]
126601
126527
-
Glu
CTC
[ENA]
¡û
>W1610528414
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
180868
180794
-
Glu
CTC
[ENA]
¡û
>W1610529469
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
198838
198764
-
Glu
CTC
[ENA]
¡û
>W1610641782
LJBS01000029
Bacillota
Pediococcus acidilactici [LJBS]
15227
15153
-
Glu
CTC
[ENA]
¡û
>W1610650099
LJIU01000007
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
115024
115098
+
Glu
CTC
[ENA]
¡û
>W1610774018
LNUM01000011
Bacillota
Pediococcus acidilactici [LNUM]
15784
15858
+
Glu
CTC
[ENA]
¡û
>W1610855968
LQNM01000019
Bacillota
Pediococcus pentosaceus [LQNM]
11923
11997
+
Glu
CTC
[ENA]
¡û
>W1610856282
LQNR01000045
Bacillota
Pediococcus acidilactici [LQNR]
237
311
+
Glu
CTC
[ENA]
¡û
>W1610873385
LRBW01000016
Bacillota
Pediococcus acidilactici [LRBW]
120258
120332
+
Glu
CTC
[ENA]
¡û
>W1610909490
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
115142
115216
+
Glu
CTC
[ENA]
¡û
>W1610977433
LVVN01000031
Bacillota
Weissella halotolerans [LVVN]
5842
5916
+
Glu
CTC
[ENA]
¡û
>W1710054498
BBZC01000018
Bacillota
Pediococcus pentosaceus [BBZC]
94675
94749
+
Glu
CTC
[ENA]
¡û
>W1710629842
JQBB01000007
Bacillota
Pediococcus claussenii [JQBB]
126601
126527
-
Glu
CTC
[ENA]
¡û
>W1710630004
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
180868
180794
-
Glu
CTC
[ENA]
¡û
>W1710631059
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
198838
198764
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK