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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303872 (42 seq.)
>C171034520
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
629773
629848
+
Val
TAC
-
¡û
>C171034521
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
629878
629953
+
Val
TAC
-
¡û
>W131179499
ARML01000081
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
67796
67871
+
Val
TAC
[ENA]
¡û
>W131214903
ATUO01000044
Gammaproteobacteria
Psychromonas hadalis ATCC BAA-638 [ATUO]
76
1
-
Val
TAC
[ENA]
¡û
>W131221448
AUAM01000016
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
118821
118896
+
Val
TAC
[ENA]
¡û
>W131221464
AUAM01000036
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
48800
48725
-
Val
TAC
[ENA]
¡û
>C016539
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1982968
1983043
+
Val
TAC
[Ensembl]
¡û
>C016540
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1983149
1983224
+
Val
TAC
[Ensembl]
¡û
>C016541
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1983330
1983405
+
Val
TAC
[Ensembl]
¡û
>C016542
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1983568
1983643
+
Val
TAC
[Ensembl]
¡û
>C016543
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1983804
1983879
+
Val
TAC
[Ensembl]
¡û
>C016544
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1984042
1984117
+
Val
TAC
[Ensembl]
¡û
>C016545
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1984280
1984355
+
Val
TAC
[Ensembl]
¡û
>WENV182577686
OJGH01000965
[OJGH] seawater metagenome; Sea water
4763
4838
+
Val
TAC
[ENA]
¢þ
>WENV170780421
MAAB01001185
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
110695
110620
-
Val
TAC
[ENA]
¢þ
>WENV170780422
MAAB01001185
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
110598
110523
-
Val
TAC
[ENA]
¢þ
>WENV170780438
MAAB01001213
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
497
422
-
Val
TAC
[ENA]
¢þ
>WENV170780439
MAAB01001213
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
396
321
-
Val
TAC
[ENA]
¢þ
>WENV170782878
MAAC01011566
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4096
4171
+
Val
TAC
[ENA]
¢þ
>WENV170782879
MAAC01011566
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4193
4268
+
Val
TAC
[ENA]
¢þ
>W09105761
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
333260
333185
-
Val
TAC
[ENA]
¡û
>W09105762
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
333079
333004
-
Val
TAC
[ENA]
¡û
>W09105763
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
332898
332823
-
Val
TAC
[ENA]
¡û
>W09105764
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
332660
332585
-
Val
TAC
[ENA]
¡û
>W09105765
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
332424
332349
-
Val
TAC
[ENA]
¡û
>W09105766
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
332186
332111
-
Val
TAC
[ENA]
¡û
>W09105767
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
331948
331873
-
Val
TAC
[ENA]
¡û
>W1911811017
QZCH01000005
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
144600
144675
+
Val
TAC
[ENA]
¡û
>W1911811018
QZCH01000005
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
144716
144791
+
Val
TAC
[ENA]
¡û
>W1810154476
PIZM01000002
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
100839
100764
-
Val
TAC
[ENA]
¡û
>W1810154477
PIZM01000002
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
100709
100634
-
Val
TAC
[ENA]
¡û
>W1810154478
PIZM01000002
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
100605
100530
-
Val
TAC
[ENA]
¡û
>W1810154479
PIZM01000002
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
100472
100397
-
Val
TAC
[ENA]
¡û
>W1810156932
PJBP01000083
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
186
111
-
Val
TAC
[ENA]
¡û
>W1810156947
PJBP01000104
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
40803
40878
+
Val
TAC
[ENA]
¡û
>W1810156948
PJBP01000104
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
40984
41059
+
Val
TAC
[ENA]
¡û
>W1810157484
PJBZ01000067
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
126448
126523
+
Val
TAC
[ENA]
¡û
>W1810157485
PJBZ01000067
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
126673
126748
+
Val
TAC
[ENA]
¡û
>W1810157486
PJBZ01000067
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
126891
126966
+
Val
TAC
[ENA]
¡û
>W1810157487
PJBZ01000067
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
127181
127256
+
Val
TAC
[ENA]
¡û
>W1810157488
PJBZ01000067
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
127286
127361
+
Val
TAC
[ENA]
¡û
>W1810157489
PJBZ01000067
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
127418
127493
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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