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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303966 (110 seq.)
>W1711043802
LRML01000012
Bacteroidota
Rufibacter roseus [LRML]
85048
84975
-
Lys
TTT
[ENA]
¡û
>W1711043821
LRMM01000008
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
25314
25241
-
Lys
TTT
[ENA]
¡û
>W1711167087
LVWA01000007
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
30095
30168
+
Lys
TTT
[ENA]
¡û
>W1711167088
LVWA01000007
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
30306
30379
+
Lys
TTT
[ENA]
¡û
>W131215988
ATVL01000010
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
570733
570808
+
Lys
TTT
[ENA]
¡û
>W131215997
ATVL01000012
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
267276
267351
+
Lys
TTT
[ENA]
¡û
>W1711377575
MDZA01000456
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
18841
18766
-
Lys
TTT
[ENA]
¡û
>W1711377602
MDZB01000103
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
17342
17269
-
Lys
TTT
[ENA]
¡û
>W1711377649
MDZC01000088
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
7737
7810
+
Lys
TTT
[ENA]
¡û
>W1711726868
MTSE01000004
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
334425
334500
+
Lys
TTT
[ENA]
¡û
>W1711767900
MVBC01000024
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
20004
19931
-
Lys
TTT
[ENA]
¡û
>W1712105564
NIRR01000003
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
95389
95314
-
Lys
TTT
[ENA]
¡û
>W1712105583
NIRR01000020
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
53772
53697
-
Lys
TTT
[ENA]
¡û
>W131167811
ARDO01000006
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
156507
156580
+
Lys
TTT
[ENA]
¡û
>W131167812
ARDO01000006
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
157530
157605
+
Lys
TTT
[ENA]
¡û
>W131180744
ARNJ01000041
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
51938
52013
+
Lys
TTT
[ENA]
¡û
>W131180749
ARNJ01000049
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
46167
46092
-
Lys
TTT
[ENA]
¡û
>W131223176
AUBW01000010
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
165007
164932
-
Lys
TTT
[ENA]
¡û
>W131223179
AUBW01000010
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
164467
164392
-
Lys
TTT
[ENA]
¡û
>WENV180036408
FVAA010076391
[FVAA] soil metagenome; Soil
1
76
+
Lys
TTT
[ENA]
¢þ
>W141151934
AXBK01000007
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
107037
106962
-
Lys
TTT
[ENA]
¡û
>W141151935
AXBK01000007
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
106859
106784
-
Lys
TTT
[ENA]
¡û
>W141152182
AXBP01000011
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
110147
110072
-
Lys
TTT
[ENA]
¡û
>W141152183
AXBP01000011
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
109937
109862
-
Lys
TTT
[ENA]
¡û
>WENV170984490
MWVV01314172
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
328
403
+
Lys
TTT
[ENA]
¢þ
>WENV170988840
MWVY01012998
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
172
97
-
Lys
TTT
[ENA]
¢þ
>WENV170988902
MWVY01025856
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
547
472
-
Lys
TTT
[ENA]
¢þ
>WENV170988903
MWVY01025856
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
411
336
-
Lys
TTT
[ENA]
¢þ
>C181175114
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
1846739
1846666
-
Lys
TTT
-
¡û
>C181193428
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
6600880
6600955
+
Lys
TTT
-
¡û
>C191018725
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
459670
459597
-
Lys
TTT
-
¡û
>C191018726
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
459460
459387
-
Lys
TTT
-
¡û
>C191154876
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1474930
1475003
+
Lys
TTT
-
¡û
>W141734702
JNLX01000034
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
66649
66574
-
Lys
TTT
[ENA]
¡û
>W1910377940
FUKU01000043
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
12695
12622
-
Lys
TTT
[ENA]
¡û
>W1910377942
FUKU01000059
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
105596
105523
-
Lys
TTT
[ENA]
¡û
>W1910548621
FZOQ01000020
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
53990
54063
+
Lys
TTT
[ENA]
¡û
>W1910548622
FZOQ01000020
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
54202
54275
+
Lys
TTT
[ENA]
¡û
>W1911788150
QYCN01000012
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
119135
119060
-
Lys
TTT
[ENA]
¡û
>W1911788167
QYCN01000036
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
660
585
-
Lys
TTT
[ENA]
¡û
>W1810089881
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2949505
2949430
-
Lys
TTT
[ENA]
¡û
>W1810089900
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
589327
589402
+
Lys
TTT
[ENA]
¡û
>W1810173091
PJMU01000003
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
343517
343444
-
Lys
TTT
[ENA]
¡û
>W1810173092
PJMU01000003
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
343386
343313
-
Lys
TTT
[ENA]
¡û
>W1810173093
PJMU01000003
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
342352
342279
-
Lys
TTT
[ENA]
¡û
>W1810346468
PVBQ01000003
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
390756
390683
-
Lys
TTT
[ENA]
¡û
>W1810346565
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
164567
164640
+
Lys
TTT
[ENA]
¡û
>W1810346575
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
1525233
1525306
+
Lys
TTT
[ENA]
¡û
>W1810368068
PVZE01000020
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
54039
54112
+
Lys
TTT
[ENA]
¡û
>W1810368069
PVZE01000020
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
54251
54324
+
Lys
TTT
[ENA]
¡û
>W1810533424
QCZK01000026
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
28423
28350
-
Lys
TTT
[ENA]
¡û
>W1810572862
QEKI01000002
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
10762
10689
-
Lys
TTT
[ENA]
¡û
>W1810572863
QEKI01000002
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
10632
10559
-
Lys
TTT
[ENA]
¡û
>W1810572881
QEKI01000014
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
110029
109956
-
Lys
TTT
[ENA]
¡û
>W1810595287
QGDT01000003
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
326687
326614
-
Lys
TTT
[ENA]
¡û
>W1810595288
QGDT01000003
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
326534
326461
-
Lys
TTT
[ENA]
¡û
>W1810595289
QGDT01000003
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
326381
326308
-
Lys
TTT
[ENA]
¡û
>W1810625892
QHKM01000003
Bacteroidota
Hymenobacter edaphi NL [QHKM]
32095
32168
+
Lys
TTT
[ENA]
¡û
>W1810625917
QHKM01000009
Bacteroidota
Hymenobacter edaphi NL [QHKM]
1995
1922
-
Lys
TTT
[ENA]
¡û
>W1810701257
QMDV01000003
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
653173
653246
+
Lys
TTT
[ENA]
¡û
>W1810701258
QMDV01000003
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
653382
653455
+
Lys
TTT
[ENA]
¡û
>W1810758679
QPIW01000001
Bacteroidota
Runella aurantiaca YX9 [QPIW]
156386
156313
-
Lys
TTT
[ENA]
¡û
>W1810789484
QRGR01000007
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
217174
217247
+
Lys
TTT
[ENA]
¡û
>W1810789485
QRGR01000007
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
217404
217477
+
Lys
TTT
[ENA]
¡û
>W1810912375
QVLT01000007
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
61583
61508
-
Lys
TTT
[ENA]
¡û
>W1810912395
QVLT01000030
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
7340
7415
+
Lys
TTT
[ENA]
¡û
>SRA1016461
SRR023846.511042
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
113
+
Lys
TTT
[SRA]
>C151009410
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2554208
2554283
+
Lys
TTT
[Ensembl]
¡û
>C151009417
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3608061
3608136
+
Lys
TTT
[Ensembl]
¡û
>C151017353
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
1477058
1477133
+
Lys
TTT
[Ensembl]
¡û
>C151017378
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
3182209
3182134
-
Lys
TTT
[Ensembl]
¡û
>C151064006
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2776513
2776440
-
Lys
TTT
[Ensembl]
¡û
>C151096199
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1056027
1056100
+
Lys
TTT
-
¡û
>W1511108326
JJMU01000052
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
320
245
-
Lys
TTT
[ENA]
¡û
>W1511543311
JZIR01000044
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
39169
39242
+
Lys
TTT
[ENA]
¡û
>W1511543312
JZIR01000044
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
40133
40206
+
Lys
TTT
[ENA]
¡û
>W1511582935
LATM01000002
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
275326
275401
+
Lys
TTT
[ENA]
¡û
>C161028448
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
127103
127030
-
Lys
TTT
[Ensembl]
¡û
>C161028449
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
126965
126892
-
Lys
TTT
[Ensembl]
¡û
>C161043252
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
3388702
3388777
+
Lys
TTT
[Ensembl]
¡û
>C161043253
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
3388843
3388916
+
Lys
TTT
[Ensembl]
¡û
>C161061564
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
4669976
4669903
-
Lys
TTT
[Ensembl]
¡û
>C161070740
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3088146
3088071
-
Lys
TTT
[Ensembl]
¡û
>C161076986
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3282363
3282438
+
Lys
TTT
-
¡û
>C161076987
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3282572
3282647
+
Lys
TTT
-
¡û
>W121084764
AKIS01000034
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
20722
20647
-
Lys
TTT
[ENA]
¡û
>W121084765
AKIS01000034
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
20592
20519
-
Lys
TTT
[ENA]
¡û
>W121084766
AKIS01000034
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
19558
19483
-
Lys
TTT
[ENA]
¡û
>W1610885101
LRML01000012
Bacteroidota
Rufibacter roseus [LRML]
85048
84975
-
Lys
TTT
[ENA]
¡û
>W1610885120
LRMM01000008
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
25314
25241
-
Lys
TTT
[ENA]
¡û
>W1710509394
FMXE01000006
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
194917
194842
-
Lys
TTT
[ENA]
¡û
>W1710509397
FMXE01000006
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
194541
194466
-
Lys
TTT
[ENA]
¡û
>W1710530535
FNOV01000001
Bacteroidota
Hymenobacter psychrophilus [FNOV]
97606
97681
+
Lys
TTT
[ENA]
¡û
>W1710530538
FNOV01000001
Bacteroidota
Hymenobacter psychrophilus [FNOV]
278949
279024
+
Lys
TTT
[ENA]
¡û
>W1710553565
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
1164065
1164140
+
Lys
TTT
[ENA]
¡û
>W1710553568
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
1344447
1344522
+
Lys
TTT
[ENA]
¡û
>W1710573739
FOXS01000003
Bacteroidota
Hymenobacter arizonensis [FOXS]
284503
284578
+
Lys
TTT
[ENA]
¡û
>W1710579019
FPCA01000006
Bacteroidota
Pontibacter akesuensis [FPCA]
74
1
-
Lys
TTT
[ENA]
¡û
>W1710579024
FPCA01000012
Bacteroidota
Pontibacter akesuensis [FPCA]
1
76
+
Lys
TTT
[ENA]
¡û
>W1710587452
FQYN01000001
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
27214
27139
-
Lys
TTT
[ENA]
¡û
>W1710587463
FQYN01000003
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
397659
397584
-
Lys
TTT
[ENA]
¡û
>W1710597883
FTNM01000003
Bacteroidota
Pontibacter lucknowensis [FTNM]
362614
362689
+
Lys
TTT
[ENA]
¡û
>W1710597884
FTNM01000003
Bacteroidota
Pontibacter lucknowensis [FTNM]
362744
362817
+
Lys
TTT
[ENA]
¡û
>W1710597885
FTNM01000003
Bacteroidota
Pontibacter lucknowensis [FTNM]
363779
363854
+
Lys
TTT
[ENA]
¡û
>W1710600032
FTPP01000003
Bacteroidota
Pontibacter indicus [FTPP]
49686
49611
-
Lys
TTT
[ENA]
¡û
>W1710600033
FTPP01000003
Bacteroidota
Pontibacter indicus [FTPP]
49555
49480
-
Lys
TTT
[ENA]
¡û
>W1710600034
FTPP01000003
Bacteroidota
Pontibacter indicus [FTPP]
43261
43188
-
Lys
TTT
[ENA]
¡û
>W1710605424
FWWW01000082
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
35538
35613
+
Lys
TTT
[ENA]
¡û
>W1710610145
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
276702
276777
+
Lys
TTT
[ENA]
¡û
>W1710610146
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
278384
278459
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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