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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304132 (32 seq.)
>W1710909540
LNQO01000005
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
302279
302204
-
Thr
CGT
[ENA]
¡û
>W1711008482
LQQA01000006
Actinomycetota
Mycolicibacterium wolinskyi [LQQA]
265037
265112
+
Thr
CGT
[ENA]
¡û
>W1711724752
MTQL01000007
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
1566407
1566482
+
Thr
CGT
[ENA]
¡û
>W1711784526
MVPX01000431
Actinomycetota
Gordonia sp. i37 [MVPX]
19302
19227
-
Thr
CGT
[ENA]
¡û
>W1712061686
NGFO01000001
Actinomycetota
Gordonia lacunae [NGFO]
364514
364439
-
Thr
CGT
[ENA]
¡û
>W131109111
APHK01000723
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
1699
1774
+
Thr
CGT
[ENA]
¡û
>W131156575
AQPW01000031
Actinomycetota
Gordonia terrae C-6 [AQPW]
14113
14188
+
Thr
CGT
[ENA]
¡û
>W131186262
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
4877720
4877795
+
Thr
CGT
[ENA]
¡û
>W131239472
BANS01000007
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
53030
53105
+
Thr
CGT
[ENA]
¡û
>W131239687
BANX01000008
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
195780
195855
+
Thr
CGT
[ENA]
¡û
>WENV180098027
MTBK01223952
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1190
1115
-
Thr
CGT
[ENA]
¢þ
>WENV170566383
FKKE01021790
[FKKE] freshwater metagenome; freshwater
3026
2951
-
Thr
CGT
[ENA]
¢þ
>C181181642
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
659174
659099
-
Thr
CGT
-
¡û
>C191020804
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
586886
586811
-
Thr
CGT
-
¡û
>C191050790
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
507568
507643
+
Thr
CGT
-
¡û
>C191143961
CP035493
Actinomycetota
Xylanimonas protaetiae FW10M-9 [CP035493]
1600141
1600214
+
Thr
CGT
-
¡û
>C191144068
CP035495
Actinomycetota
Xylanimonas allomyrinae 2JSPR-7 [CP035495]
3281889
3281963
+
Thr
CGT
-
¡û
>W141756198
JNXA01000007
Actinomycetota
Gordonia terrae [JNXA]
14709
14784
+
Thr
CGT
[ENA]
¡û
>W1810189550
PKJC01000013
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
53110
53185
+
Thr
CGT
[ENA]
¡û
>W1610050699
BBGD01000216
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
121
196
+
Thr
CGT
[ENA]
¡û
>W121123921
BAEI01000087
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
48484
48409
-
Thr
CGT
[ENA]
¡û
>W121126576
BAHC01000048
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
34197
34122
-
Thr
CGT
[ENA]
¡û
>W121126685
BAHE01000015
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
149798
149723
-
Thr
CGT
[ENA]
¡û
>W1610617498
LGTW01000009
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
108637
108562
-
Thr
CGT
[ENA]
¡û
>W1610638784
LIYC01000056
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
23275
23200
-
Thr
CGT
[ENA]
¡û
>W1610767899
LNQO01000005
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
302279
302204
-
Thr
CGT
[ENA]
¡û
>W1710047098
BBGD01000216
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
121
196
+
Thr
CGT
[ENA]
¡û
>W1710527894
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
3404620
3404695
+
Thr
CGT
[ENA]
¡û
>W1710604022
FUZP01000002
Actinomycetota
Okibacterium fritillariae [FUZP]
286005
286080
+
Thr
CGT
[ENA]
¡û
>W1710619862
JMHR01000246
Actinomycetota
Mycobacterium sp. SWH-M3 [JMHR]
7184
7111
-
Thr
CGT
[ENA]
¡û
>W1710743085
LGTW01000009
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
108637
108562
-
Thr
CGT
[ENA]
¡û
>W1710774615
LIYC01000056
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
23275
23200
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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