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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304139 (80 seq.)
>W1710806102
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
816067
815992
-
Ala
GGC
[ENA]
¡û
>W1710806141
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
75892
75817
-
Ala
GGC
[ENA]
¡û
>W1711136295
LVAA01000211
Thermodesulfobacteriota
Syntrophobacterales bacterium Delta_02 [LVAA]
1415
1490
+
Ala
GGC
[ENA]
¡û
>W1711411760
MGTN01000032
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
11027
11102
+
Ala
GGC
[ENA]
¡û
>W1711510617
MLBG01000025
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
4763
4838
+
Ala
GGC
[ENA]
¡û
>W131161012
AQXE01000007
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
132204
132279
+
Ala
GGC
[ENA]
¡û
>W131215442
ATVA01000001
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
38439
38364
-
Ala
GGC
[ENA]
¡û
>W131215443
ATVA01000001
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
10077
10002
-
Ala
GGC
[ENA]
¡û
>W131222776
AUBO01000004
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [AUBO]
75982
75907
-
Ala
GGC
[ENA]
¡û
>W131222789
AUBO01000014
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [AUBO]
2184
2109
-
Ala
GGC
[ENA]
¡û
>W131222831
AUBP01000001
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
405768
405693
-
Ala
GGC
[ENA]
¡û
>W131222833
AUBP01000002
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
386370
386295
-
Ala
GGC
[ENA]
¡û
>W131224616
AUCY01000006
Thermodesulfobacteriota
Desulfovibrio cuneatus DSM 11391 [AUCY]
5356
5281
-
Ala
GGC
[ENA]
¡û
>W131224630
AUCY01000012
Thermodesulfobacteriota
Desulfovibrio cuneatus DSM 11391 [AUCY]
23259
23334
+
Ala
GGC
[ENA]
¡û
>C007545
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
3713115
3713040
-
Ala
GGC
[Ensembl]
¡û
>WENV180042815
LQAG01001614
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1292
1217
-
Ala
GGC
[ENA]
¢þ
>WENV180043547
LQAI01000563
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2310
2235
-
Ala
GGC
[ENA]
¢þ
>WENV180043631
LQAI01003616
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
134
59
-
Ala
GGC
[ENA]
¢þ
>WENV180043982
LQAJ01000169
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
27966
28041
+
Ala
GGC
[ENA]
¢þ
>W141027979
ALAO01000066
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
9312
9387
+
Ala
GGC
[ENA]
¡û
>WENV180372603
OBOI01100553
[OBOI] sediment metagenome; sediment
487
412
-
Ala
GGC
[ENA]
¢þ
>WENV181638867
OGNC01023585
[OGNC] metagenome; Human gut stool
826
751
-
Ala
GGC
[ENA]
¢þ
>W141169753
AXWQ01000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
125578
125653
+
Ala
GGC
[ENA]
¡û
>W141169798
AXWQ01000011
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
30888
30813
-
Ala
GGC
[ENA]
¡û
>W141279138
JAGC01000003
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
1325269
1325344
+
Ala
GGC
[ENA]
¡û
>WENV183707705
PDWI01010041
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1260
1185
-
Ala
GGC
[ENA]
¢þ
>WENV183746792
PPCM01000010
[PPCM] marine sediment metagenome; marine sediment
473788
473863
+
Ala
GGC
[ENA]
¢þ
>WENV183747090
PPCM01000187
[PPCM] marine sediment metagenome; marine sediment
8253
8328
+
Ala
GGC
[ENA]
¢þ
>WENV183747482
PPCM01003087
[PPCM] marine sediment metagenome; marine sediment
4211
4136
-
Ala
GGC
[ENA]
¢þ
>WENV170112592
CEGF01005316
[CEGF] microbial mat metagenome; grass silage
701
626
-
Ala
GGC
[ENA]
¢þ
>WENV170418527
CEUM01048080
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1351
1426
+
Ala
GGC
[ENA]
¢þ
>WENV170419413
CEUM01125723
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17990
17915
-
Ala
GGC
[ENA]
¢þ
>WENV170436957
CEUU01004821
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1367
1442
+
Ala
GGC
[ENA]
¢þ
>WENV170656444
JTFO01016446
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
4077
4002
-
Ala
GGC
[ENA]
¢þ
>WENV170657071
JTFO01076824
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
192
267
+
Ala
GGC
[ENA]
¢þ
>WENV170715188
LNQE01000327
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
10043
9968
-
Ala
GGC
[ENA]
¢þ
>WENV170891261
MDTD01021398
[MDTD] marine metagenome; seawater
1302
1377
+
Ala
GGC
[ENA]
¢þ
>WENV170892865
MDTD01043965
[MDTD] marine metagenome; seawater
3017
2942
-
Ala
GGC
[ENA]
¢þ
>C181226982
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3220876
3220951
+
Ala
GGC
-
¡û
>C181226984
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3490832
3490907
+
Ala
GGC
-
¡û
>C191045090
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
68312
68237
-
Ala
GGC
-
¡û
>W141731326
JNJA01000001
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
500330
500405
+
Ala
GGC
[ENA]
¡û
>W09100664
AABN02000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
137206
137281
+
Ala
GGC
[ENA]
¡û
>C09104087
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
84112
84187
+
Ala
GGC
[Ensembl]
¡û
>C09104191
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
991902
991977
+
Ala
GGC
[Ensembl]
¡û
>C141005268
CP006585
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [CP006585]
2473758
2473833
+
Ala
GGC
[Ensembl]
¡û
>C141005272
CP006585
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [CP006585]
3326394
3326469
+
Ala
GGC
[Ensembl]
¡û
>W1910547857
FZOC01000011
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
2310
2235
-
Ala
GGC
[ENA]
¡û
>W1910547858
FZOC01000012
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
3380
3305
-
Ala
GGC
[ENA]
¡û
>W1911737998
QTZO01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
332522
332447
-
Ala
GGC
[ENA]
¡û
>W1911737999
QTZO01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
189733
189658
-
Ala
GGC
[ENA]
¡û
>W10111383
ADDI01000016
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
2164
2239
+
Ala
GGC
[ENA]
¡û
>W10111385
ADDI01000019
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
48944
49019
+
Ala
GGC
[ENA]
¡û
>W10112665
ADFE01000029
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
18122
18197
+
Ala
GGC
[ENA]
¡û
>W10126108
AECZ01000003
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
142029
141954
-
Ala
GGC
[ENA]
¡û
>C11106844
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1016693
1016768
+
Ala
GGC
[Ensembl]
¡û
>C11106855
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2989985
2990060
+
Ala
GGC
[Ensembl]
¡û
>W11114326
ADDI01000016
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
2164
2239
+
Ala
GGC
[ENA]
¡û
>W11114328
ADDI01000019
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
48944
49019
+
Ala
GGC
[ENA]
¡û
>W11115872
ADFE02000001
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
2888089
2888164
+
Ala
GGC
[ENA]
¡û
>W1511365628
JSEH01000006
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
200063
200138
+
Ala
GGC
[ENA]
¡û
>W11133369
AECZ01000003
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
142029
141954
-
Ala
GGC
[ENA]
¡û
>W11149126
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
598147
598072
-
Ala
GGC
[ENA]
¡û
>W11149127
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
390008
389933
-
Ala
GGC
[ENA]
¡û
>C121009001
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
1607781
1607706
-
Ala
GGC
[Ensembl]
¡û
>C121009002
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
1399642
1399567
-
Ala
GGC
[Ensembl]
¡û
>C161068243
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1479620
1479695
+
Ala
GGC
[Ensembl]
¡û
>C161068244
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1683527
1683602
+
Ala
GGC
[Ensembl]
¡û
>W121036461
AHMC01000004
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
185239
185314
+
Ala
GGC
[ENA]
¡û
>W1610046045
BBCB01000007
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
33137
33212
+
Ala
GGC
[ENA]
¡û
>W1610046068
BBCB01000068
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
3365
3290
-
Ala
GGC
[ENA]
¡û
>C131017933
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3067399
3067474
+
Ala
GGC
[Ensembl]
¡û
>C131017947
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1360831
1360756
-
Ala
GGC
[Ensembl]
¡û
>C131018147
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
329409
329334
-
Ala
GGC
[Ensembl]
¡û
>W1610947415
LVAA01000211
Thermodesulfobacteriota
Syntrophobacterales bacterium Delta_02 [LVAA]
1415
1490
+
Ala
GGC
[ENA]
¡û
>W1710042841
BBCB01000007
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
33137
33212
+
Ala
GGC
[ENA]
¡û
>W1710042864
BBCB01000068
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
3365
3290
-
Ala
GGC
[ENA]
¡û
>W1710602276
FUYC01000001
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
95073
95148
+
Ala
GGC
[ENA]
¡û
>W1710602281
FUYC01000001
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
191903
191828
-
Ala
GGC
[ENA]
¡û
>W1710602283
FUYC01000002
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
83792
83867
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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