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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304140 (41 seq.)
>W1710806110
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
182017
181942
-
Lys
CTT
[ENA]
¡û
>W1711411787
MGTN01000151
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
1045
970
-
Lys
CTT
[ENA]
¡û
>W1711581846
MNUQ01000055
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CG1_02_65_16 [MNUQ]
2456
2381
-
Lys
CTT
[ENA]
¡û
>W131160979
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
76206
76281
+
Lys
CTT
[ENA]
¡û
>W131215465
ATVA01000013
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
339834
339759
-
Lys
CTT
[ENA]
¡û
>W131236083
AUMA01000003
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
129171
129246
+
Lys
CTT
[ENA]
¡û
>WENV180043599
LQAI01001838
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2641
2566
-
Lys
CTT
[ENA]
¢þ
>WENV180043600
LQAI01001838
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2383
2308
-
Lys
CTT
[ENA]
¢þ
>WENV180043970
LQAJ01000136
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
27547
27622
+
Lys
CTT
[ENA]
¢þ
>WENV180043971
LQAJ01000136
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
27804
27879
+
Lys
CTT
[ENA]
¢þ
>WENV180299035
OBJA01903860
[OBJA] soil metagenome; sediment, water from around vicinity
68
143
+
Lys
CTT
[ENA]
¢þ
>WENV180582095
OCMO01000369
[OCMO] metagenome; diffuse fluid
89
14
-
Lys
CTT
[ENA]
¢þ
>WENV181207467
OFAZ01000586
[OFAZ] metagenome; hydrothermal vent
4422
4497
+
Lys
CTT
[ENA]
¢þ
>WENV181207828
OFBA01000566
[OFBA] metagenome; hydrothermal vent
5109
5184
+
Lys
CTT
[ENA]
¢þ
>WENV181223780
OFDD01000255
[OFDD] metagenome; hydrothermal vent
7303
7378
+
Lys
CTT
[ENA]
¢þ
>W141278223
JAFE01000003
Thermodesulfobacteriota
Desulfonatronum lacustre DSM 10312 [JAFE]
198119
198044
-
Lys
CTT
[ENA]
¡û
>WENV183512896
OMKS01001729
[OMKS] sediment metagenome; hot spring sediment
5174
5099
-
Lys
CTT
[ENA]
¢þ
>WENV183706209
PDWI01003437
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16415
16340
-
Lys
CTT
[ENA]
¢þ
>WENV183746856
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
72909
72984
+
Lys
CTT
[ENA]
¢þ
>WENV170419814
CEUM01137962
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35902
35827
-
Lys
CTT
[ENA]
¢þ
>WENV170437714
CEUU01060724
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2761
2836
+
Lys
CTT
[ENA]
¢þ
>WENV170441908
CEUV01298121
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1779
1704
-
Lys
CTT
[ENA]
¢þ
>WENV170895353
MDTD01078053
[MDTD] marine metagenome; seawater
14628
14553
-
Lys
CTT
[ENA]
¢þ
>C181226971
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
219658
219733
+
Lys
CTT
-
¡û
>W141804584
JPIK01000006
Thermodesulfobacteriota
Desulfonatronum thiodismutans [JPIK]
177941
177866
-
Lys
CTT
[ENA]
¡û
>W1910547827
FZOC01000001
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
63003
62928
-
Lys
CTT
[ENA]
¡û
>W1911738009
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
271690
271765
+
Lys
CTT
[ENA]
¡û
>W1810445560
PZKN01000017
Thermodesulfobacteriota
Desulfonatronum sp. SC1 [PZKN]
55744
55819
+
Lys
CTT
[ENA]
¡û
>W10111367
ADDI01000005
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
48794
48869
+
Lys
CTT
[ENA]
¡û
>C11106847
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1549202
1549277
+
Lys
CTT
[Ensembl]
¡û
>W11114310
ADDI01000005
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
48794
48869
+
Lys
CTT
[ENA]
¡û
>W1511534047
JYNO01000001
Thermodesulfobacteriota
Desulfonatronum thioautotrophicum ASO4-1 [JYNO]
862901
862826
-
Lys
CTT
[ENA]
¡û
>W1511534120
JYNP01000051
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
15013
14938
-
Lys
CTT
[ENA]
¡û
>W11149116
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
43392
43317
-
Lys
CTT
[ENA]
¡û
>C121009010
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
701067
700992
-
Lys
CTT
[Ensembl]
¡û
>C161068252
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2492647
2492722
+
Lys
CTT
[Ensembl]
¡û
>W1610046031
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
18769
18844
+
Lys
CTT
[ENA]
¡û
>C131017907
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
290283
290358
+
Lys
CTT
[Ensembl]
¡û
>W1710042827
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
18769
18844
+
Lys
CTT
[ENA]
¡û
>W1710509923
FMXO01000007
Thermodesulfobacteriota
Desulfonatronum thiosulfatophilum [FMXO]
166325
166250
-
Lys
CTT
[ENA]
¡û
>W1710602311
FUYC01000009
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
96043
96118
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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