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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304196 (34 seq.)
>A171000039
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
110249
110177
-
Arg
GCG
-
¡û
>A171000428
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
118230
118303
+
Arg
GCG
-
¡û
>A171001196
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
450296
450224
-
Arg
GCG
-
¡û
>A171001419
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
452423
452351
-
Arg
GCG
-
¡û
>A171006705
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1712012
1711940
-
Arg
GCG
-
¡û
>A171006746
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
1815039
1814967
-
Arg
GCG
-
¡û
>A171007463
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
314377
314304
-
Arg
GCG
-
¡û
>WENV170008809
APHM01007595
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
741
666
-
Arg
GCG
[ENA]
¢þ
>WENV170008846
APHM01010119
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
364
436
+
Arg
GCG
[ENA]
¢þ
>WENV170009114
APHM01021352
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1323
1250
-
Arg
GCG
[ENA]
¢þ
>WENV170009266
APHM01022057
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4933
5005
+
Arg
GCG
[ENA]
¢þ
>WENV170703157
LKMJ01007317
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5256
5182
-
Arg
GCG
[ENA]
¢þ
>WENV170703414
LKMJ01011211
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7856
7782
-
Arg
GCG
[ENA]
¢þ
>W1910186245
CCDK010000004
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
94271
94199
-
Arg
GCG
[ENA]
¡û
>W1910193542
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1613232
1613305
+
Arg
GCG
[ENA]
¡û
>W1910752262
MKFG01000007
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
91364
91437
+
Arg
GCG
[ENA]
¡û
>W1911630014
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
196063
195991
-
Arg
GCG
[ENA]
¡û
>W1911630066
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
519351
519278
-
Arg
GCG
[ENA]
¡û
>W1911655724
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1240624
1240697
+
Arg
GCG
[ENA]
¡û
>W1911709495
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
514408
514336
-
Arg
GCG
[ENA]
¡û
>C151003921
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2562402
2562330
-
Arg
GCG
[Ensembl]
¡û
>W1610003690
AGCZ01000774
Euryarchaeota
halophilic archaeon J07HB67 [AGCZ]
4933
5005
+
Pseudo
GCG
[ENA]
¡û
>W1610011534
ANPG01000597
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
2125
2053
-
Pseudo
GCG
[ENA]
¡û
>W1610013465
AOLD01000031
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
55903
55975
+
Pseudo
GCG
[ENA]
¡û
>W1610013750
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
438240
438313
+
Pseudo
GCG
[ENA]
¡û
>W1610013927
AOLM01000018
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
86324
86396
+
Pseudo
GCG
[ENA]
¡û
>W1610019056
ARPW01000015
Euryarchaeota
halophilic archaeon J07HX5 [ARPW]
5511
5584
+
Pseudo
GCG
[ENA]
¡û
>W1610019160
ARPZ01000001
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
14632
14557
-
Pseudo
GCG
[ENA]
¡û
>W1610085093
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
96136
96063
-
Pseudo
GCG
[ENA]
¡û
>W1610085151
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
2411647
2411720
+
Pseudo
GCG
[ENA]
¡û
>W1610085190
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2453535
2453608
+
Pseudo
GCG
[ENA]
¡û
>W1610784285
LOEP01000016
Euryarchaeota
Haloferax sp. Q22 [LOEP]
44333
44405
+
Pseudo
GCG
[ENA]
¡û
>W1610799856
LOPV01000317
Euryarchaeota
Haloferax profundi SB29 [LOPV]
4239
4167
-
Pseudo
GCG
[ENA]
¡û
>W1610799896
LOPW01000059
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
259268
259340
+
Pseudo
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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