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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304458 (34 seq.)
>W1711410106
MGPP01000174
Unclassified
Deltaproteobacteria bacterium GWB2_42_7 [MGPP]
62
137
+
Lys
TTT
[ENA]
¡û
>W1711414281
MGZH01000097
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
9622
9547
-
Lys
TTT
[ENA]
¡û
>W1711414296
MGZI01000003
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_48_7 [MGZI]
295
370
+
Lys
TTT
[ENA]
¡û
>W1711414327
MGZJ01000020
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
1232
1307
+
Lys
TTT
[ENA]
¡û
>W1711414393
MGZK01000149
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
817
742
-
Lys
TTT
[ENA]
¡û
>W1711414430
MGZL01000119
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
144410
144485
+
Lys
TTT
[ENA]
¡û
>W1711414432
MGZL01000119
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
144629
144704
+
Lys
TTT
[ENA]
¡û
>W1711414451
MGZM01000081
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
85
10
-
Lys
TTT
[ENA]
¡û
>W131228713
AUGE01000003
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
122132
122057
-
Lys
TTT
[ENA]
¡û
>W131228715
AUGE01000003
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
121935
121860
-
Lys
TTT
[ENA]
¡û
>C010229
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
792083
792158
+
Lys
TTT
[Ensembl]
¡û
>C017481
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
3386631
3386706
+
Lys
TTT
[Ensembl]
¡û
>w018097
AASH01000007
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
4334
4409
+
Lys
TTT
[ENA]
¡û
>WENV181231416
OFEK01025017
[OFEK] activated sludge metagenome; Anaerobic digester
393
468
+
Lys
TTT
[ENA]
¢þ
>W08010645
ABRF01000008
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
59748
59823
+
Lys
TTT
[ENA]
¡û
>W08010647
ABRF01000008
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
59945
60020
+
Lys
TTT
[ENA]
¡û
>C08005222
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
664552
664480
-
Lys
TTT
[Ensembl]
¡û
>C08005224
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
664355
664283
-
Lys
TTT
[Ensembl]
¡û
>WENV183703939
PDVJ01072448
[PDVJ] alkali sediment metagenome; glacial lake sediment
163
88
-
Lys
TTT
[ENA]
¢þ
>WENV170003033
AGTN01205222
[AGTN] bioreactor metagenome; poplar biomass
183
258
+
Lys
TTT
[ENA]
¢þ
>W09103526
AAJH01000005
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
227488
227413
-
Lys
TTT
[ENA]
¡û
>W09105092
AAON01000128
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
5451
5526
+
Lys
TTT
[ENA]
¡û
>W09133624
ACPJ01000027
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
40473
40398
-
Lys
TTT
[ENA]
¡û
>W09133626
ACPJ01000027
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
40279
40204
-
Lys
TTT
[ENA]
¡û
>C09106340
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
927765
927840
+
Lys
TTT
[Ensembl]
¡û
>C09106435
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
689439
689364
-
Lys
TTT
[Ensembl]
¡û
>C09106437
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
689242
689167
-
Lys
TTT
[Ensembl]
¡û
>W1810486168
QAXR01000008
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
149798
149873
+
Lys
TTT
[ENA]
¡û
>C151059739
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
3293809
3293884
+
Lys
TTT
[Ensembl]
¡û
>W1510006468
BAZF01000033
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
5232
5157
-
Lys
TTT
[ENA]
¡û
>C11109573
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
4450584
4450659
+
Lys
TTT
[Ensembl]
¡û
>C11109575
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
4450778
4450853
+
Lys
TTT
[Ensembl]
¡û
>W1610046442
BBCJ01000024
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
38541
38616
+
Lys
TTT
[ENA]
¡û
>W1710043238
BBCJ01000024
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
38541
38616
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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