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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304536 (43 seq.)
>W131186209
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
508550
508475
-
Thr
TGT
[ENA]
¡û
>W131186571
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1388025
1387950
-
Thr
TGT
[ENA]
¡û
>WENV180110969
OAPN01018187
[OAPN] marine metagenome; 2011
551
476
-
Thr
TGT
[ENA]
¢þ
>WENV180361763
OBNW01000550
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
399
474
+
Thr
TGT
[ENA]
¢þ
>WENV180365772
OBOC01030156
[OBOC] marine metagenome; ocean water
301
376
+
Thr
TGT
[ENA]
¢þ
>WENV181187992
OEOE01009820
[OEOE] activated sludge metagenome; Activated Sludge
277
202
-
Thr
TGT
[ENA]
¢þ
>WENV181368863
OFQN01002171
[OFQN] freshwater metagenome; Freshwater Lake
922
997
+
Thr
TGT
[ENA]
¢þ
>WENV181369620
OFQP01012984
[OFQP] freshwater metagenome; Freshwater Lake
455
380
-
Thr
TGT
[ENA]
¢þ
>WENV181379603
OFRD01003940
[OFRD] wastewater metagenome; Exp Tend CN 100WW
798
873
+
Thr
TGT
[ENA]
¢þ
>WENV181836425
OGVJ01006729
[OGVJ] freshwater metagenome; freshwater
1164
1239
+
Thr
TGT
[ENA]
¢þ
>WENV181843398
OGVU01012211
[OGVU] freshwater metagenome; freshwater
45
120
+
Thr
TGT
[ENA]
¢þ
>WENV181843425
OGVU01014240
[OGVU] freshwater metagenome; freshwater
96
171
+
Thr
TGT
[ENA]
¢þ
>WENV181843597
OGVU01033066
[OGVU] freshwater metagenome; freshwater
408
483
+
Thr
TGT
[ENA]
¢þ
>WENV183736828
PJUD01000046
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
618
543
-
Thr
TGT
[ENA]
¢þ
>WENV183739277
PJUE01005794
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1759
1834
+
Thr
TGT
[ENA]
¢þ
>WENV183740614
PJUF01004516
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1213
1288
+
Thr
TGT
[ENA]
¢þ
>WENV170559044
CXWL01107736
[CXWL] groundwater metagenome; biofilm material
11076
11151
+
Thr
TGT
[ENA]
¢þ
>WENV170574965
FLYN01020466
[FLYN] hot springs metagenome; Sediment
331
256
-
Thr
TGT
[ENA]
¢þ
>WENV170654535
JRYL01000222
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
195422
195497
+
Thr
TGT
[ENA]
¢þ
>WENV170654801
JRYL01023830
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2509
2584
+
Thr
TGT
[ENA]
¢þ
>WENV170961318
MLJW01000004
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
152082
152007
-
Thr
TGT
[ENA]
¢þ
>WENV170961456
MLJW01000054
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
42125
42050
-
Thr
TGT
[ENA]
¢þ
>W1910547745
FZOA01000004
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
1682
1607
-
Thr
TGT
[ENA]
¡û
>W1910730028
MHBU01000022
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
119905
119980
+
Thr
TGT
[ENA]
¡û
>C151104234
LN827929
Betaproteobacteria
Candidatus Methylopumilus planktonicus MMS-10A-171 [LN827929]
183156
183231
+
Thr
TGT
[Ensembl]
¡û
>ENV09000086
ABSN01006905
Freshwater sediment metagenome lwFormaldehyde_C1
354
279
-
Thr
TGT
[ENA]
¡û
>ENV09000119
ABSN01014228
Freshwater sediment metagenome lwFormaldehyde_C1
369
294
-
Thr
TGT
[ENA]
¡û
>ENV09000763
ABSP01031748
Freshwater sediment metagenome lwMethane_C1
627
702
+
Thr
TGT
[ENA]
¡û
>ENV09001042
ABSQ01021434
Freshwater sediment metagenome lwMethenol_C1
588
513
-
Thr
TGT
[ENA]
¡û
>ENV09001440
ABSR01008649
Freshwater sediment metagenome lwMethylamine_C1
202
127
-
Thr
TGT
[ENA]
¡û
>ENV09001470
ABSR01013362
Freshwater sediment metagenome lwMethylamine_C1
585
510
-
Thr
TGT
[ENA]
¡û
>C10109339
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
357226
357301
+
Thr
TGT
[Ensembl]
¡û
>C10109360
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2956225
2956150
-
Thr
TGT
[Ensembl]
¡û
>W1511433535
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1963292
1963367
+
Thr
TGT
[ENA]
¡û
>W1511433536
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2157709
2157784
+
Thr
TGT
[ENA]
¡û
>WENV047215
AACY022647211
Marine microbial communities from Global Ocean Sampling (GOS)
538
613
+
Thr
TGT
[ENA]
>C161030818
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
108058
108133
+
Thr
TGT
[Ensembl]
¡û
>C161030877
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
457918
457843
-
Thr
TGT
[Ensembl]
¡û
>C161030911
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
457918
457843
-
Thr
TGT
[Ensembl]
¡û
>WENV058925
AACY023347323
Marine microbial communities from Global Ocean Sampling (GOS)
578
653
+
Thr
TGT
[ENA]
>WENV006639
AACY020177457
Marine microbial communities from Global Ocean Sampling (GOS)
545
470
-
Thr
TGT
[ENA]
>WENV006795
AACY020179772
Marine microbial communities from Global Ocean Sampling (GOS)
78
153
+
Thr
TGT
[ENA]
>WENV074553
AACY023982648
Marine microbial communities from Global Ocean Sampling (GOS)
843
768
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK