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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30494 (68 seq.)
>W1710858007
LMAR01000001
Alphaproteobacteria
Bosea thiooxidans [LMAR]
60048
59958
-
Ser
GCT
[ENA]
¡û
>W1710869462
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
19357
19267
-
Ser
GCT
[ENA]
¡û
>W1710869503
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
477502
477592
+
Ser
GCT
[ENA]
¡û
>W1710869629
LMJW01000016
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
337611
337701
+
Ser
GCT
[ENA]
¡û
>W1710879538
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
178444
178354
-
Ser
GCT
[ENA]
¡û
>W1710893348
LNER01000043
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
2964
2874
-
Ser
GCT
[ENA]
¡û
>W1711072947
LSIB01000104
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
355
265
-
Ser
GCT
[ENA]
¡û
>W1711073122
LSIG01000046
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
249854
249764
-
Ser
GCT
[ENA]
¡û
>W1711073298
LSIK01000182
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
15610
15700
+
Ser
GCT
[ENA]
¡û
>W1711073802
LSIY01000031
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
41308
41218
-
Ser
GCT
[ENA]
¡û
>W1711074498
LSJP01000089
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
16115
16205
+
Ser
GCT
[ENA]
¡û
>W1711074579
LSJR01000010
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
24528
24438
-
Ser
GCT
[ENA]
¡û
>W1711074746
LSJU01001317
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
8546
8636
+
Ser
GCT
[ENA]
¡û
>W1711074770
LSJV01000124
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
35739
35829
+
Ser
GCT
[ENA]
¡û
>W1711074858
LSJX01000189
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
16100
16190
+
Ser
GCT
[ENA]
¡û
>W1711075563
LSKN01000088
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
133423
133333
-
Ser
GCT
[ENA]
¡û
>W1711502375
MKSQ01000008
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
111776
111866
+
Ser
GCT
[ENA]
¡û
>C171049989
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2239920
2239830
-
Ser
GCT
-
¡û
>C171057737
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
3441435
3441525
+
Ser
GCT
-
¡û
>WENV181227129
OFDN01002121
[OFDN] hot springs metagenome; Water
836
926
+
Ser
GCT
[ENA]
¢þ
>WENV181308426
OFIS01018097
[OFIS] sludge metagenome; sludge
363
453
+
Ser
GCT
[ENA]
¢þ
>WENV181415115
OGCL01004334
[OGCL] hot springs metagenome; Hot spring water
3434
3524
+
Ser
GCT
[ENA]
¢þ
>WENV183741053
PJUF01032342
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
402
492
+
Ser
GCT
[ENA]
¢þ
>WENV170012020
APMI01112069
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1555
1465
-
Ser
GCT
[ENA]
¢þ
>WENV170680777
LFEF01021149
[LFEF] freshwater metagenome; waterbloom
484
574
+
Ser
GCT
[ENA]
¢þ
>WENV170712563
LNFM01014945
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9433
9343
-
Ser
GCT
[ENA]
¢þ
>WENV170712675
LNFM01016271
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10195
10285
+
Ser
GCT
[ENA]
¢þ
>WENV170714577
LNFM01082937
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2
92
+
Ser
GCT
[ENA]
¢þ
>C181063197
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
3715472
3715562
+
Ser
GCT
-
¡û
>C191014034
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
2236529
2236439
-
Ser
GCT
-
¡û
>W141805321
JPKG01000059
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
31023
30933
-
Ser
GCT
[ENA]
¡û
>W141815815
JQJJ01000012
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
304140
304230
+
Ser
GCT
[ENA]
¡û
>W1910501735
FYAS01000043
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
182756
182666
-
Ser
GCT
[ENA]
¡û
>W1910635425
LNCQ01000050
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
6976
7066
+
Ser
GCT
[ENA]
¡û
>W1910840137
MZXT01000013
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
12460
12550
+
Ser
GCT
[ENA]
¡û
>W1910840151
MZXU01000002
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
12332
12422
+
Ser
GCT
[ENA]
¡û
>W1910847668
NBDP01000030
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
51799
51709
-
Ser
GCT
[ENA]
¡û
>W1810252033
PQFZ01000039
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
7384
7294
-
Ser
GCT
[ENA]
¡û
>W1810463390
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
56783
56693
-
Ser
GCT
[ENA]
¡û
>W1810676922
QKMI01000024
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
6170
6260
+
Ser
GCT
[ENA]
¡û
>W1810783300
QQTO01000012
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
4257
4167
-
Ser
GCT
[ENA]
¡û
>W1810783354
QQTP01000009
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
4257
4167
-
Ser
GCT
[ENA]
¡û
>W1511353037
JROW01000591
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
6928
7018
+
Ser
GCT
[ENA]
¡û
>C161070665
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
572290
572380
+
Ser
GCT
[Ensembl]
¡û
>W1610720353
LMAR01000001
Alphaproteobacteria
Bosea thiooxidans [LMAR]
60048
59958
-
Ser
GCT
[ENA]
¡û
>W1610731808
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
19357
19267
-
Ser
GCT
[ENA]
¡û
>W1610731849
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
477502
477592
+
Ser
GCT
[ENA]
¡û
>W1610731975
LMJW01000016
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
337611
337701
+
Ser
GCT
[ENA]
¡û
>W1610741884
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
178444
178354
-
Ser
GCT
[ENA]
¡û
>W1610753614
LNER01000043
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
2964
2874
-
Ser
GCT
[ENA]
¡û
>W1610912207
LSIB01000104
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
355
265
-
Ser
GCT
[ENA]
¡û
>W1610912427
LSIG01000046
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
249854
249764
-
Ser
GCT
[ENA]
¡û
>W1610912603
LSIK01000182
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
15610
15700
+
Ser
GCT
[ENA]
¡û
>W1610913107
LSIY01000031
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
41308
41218
-
Ser
GCT
[ENA]
¡û
>W1610913803
LSJP01000089
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
16115
16205
+
Ser
GCT
[ENA]
¡û
>W1610913884
LSJR01000010
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
24528
24438
-
Ser
GCT
[ENA]
¡û
>W1610914051
LSJU01001317
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
8546
8636
+
Ser
GCT
[ENA]
¡û
>W1610914075
LSJV01000124
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
35739
35829
+
Ser
GCT
[ENA]
¡û
>W1610914163
LSJX01000189
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
16100
16190
+
Ser
GCT
[ENA]
¡û
>W1610914868
LSKN01000088
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
133423
133333
-
Ser
GCT
[ENA]
¡û
>W1710064214
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
454586
454496
-
Ser
GCT
[ENA]
¡û
>W1710515675
FNBZ01000001
Alphaproteobacteria
Bosea robiniae [FNBZ]
455705
455795
+
Ser
GCT
[ENA]
¡û
>W1710538963
FNUY01000008
Alphaproteobacteria
Bosea lathyri [FNUY]
179268
179358
+
Ser
GCT
[ENA]
¡û
>W1710544007
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
1115093
1115003
-
Ser
GCT
[ENA]
¡û
>W1710557010
FOKP01000041
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
31512
31422
-
Ser
GCT
[ENA]
¡û
>W1710564936
FOQV01000009
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
229548
229638
+
Ser
GCT
[ENA]
¡û
>W1710596419
FTMO01000001
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
371148
371238
+
Ser
GCT
[ENA]
¡û
>W1710603296
FUYX01000014
Alphaproteobacteria
Bosea thiooxidans [FUYX]
55976
56066
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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