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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304963 (30 seq.)
>W131170323
ARFL01000002
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
1004244
1004319
+
Glu
TTC
[ENA]
¡û
>W131223604
AUCE01000018
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
57736
57811
+
Glu
TTC
[ENA]
¡û
>C171049765
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
55824
55749
-
Glu
TTC
-
¡û
>WENV180255382
OBEQ010720030
[OBEQ] groundwater metagenome; groundwater
2530
2455
-
Glu
TTC
[ENA]
¢þ
>WENV181222958
OFDC01000833
[OFDC] hot springs metagenome; Water
15014
14939
-
Glu
TTC
[ENA]
¢þ
>W141216063
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
282756
282831
+
Glu
TTC
[ENA]
¡û
>WENV170006102
AMQJ01033504
[AMQJ] sediment metagenome; subsurface aquifer sediment
54
129
+
Glu
TTC
[ENA]
¢þ
>W141426801
JEMX01000098
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
30543
30618
+
Glu
TTC
[ENA]
¡û
>W141426829
JEMY01000036
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
8260
8335
+
Glu
TTC
[ENA]
¡û
>WENV170639289
JFJP01001759
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12738
12663
-
Glu
TTC
[ENA]
¢þ
>WENV170639435
JFJP01002685
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2
77
+
Glu
TTC
[ENA]
¢þ
>WENV170639510
JFJP01003807
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
423
498
+
Glu
TTC
[ENA]
¢þ
>WENV170639820
JFJP01008968
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5312
5387
+
Glu
TTC
[ENA]
¢þ
>WENV170649287
JRHI01016804
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
729
654
-
Glu
TTC
[ENA]
¢þ
>WENV170657024
JTFO01070072
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
257
332
+
Glu
TTC
[ENA]
¢þ
>C181121209
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1975818
1975743
-
Glu
TTC
-
¡û
>C181121212
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1975415
1975340
-
Glu
TTC
-
¡û
>C10101098
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
22473
22548
+
Glu
TTC
[Ensembl]
¡û
>C10101123
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4672695
4672620
-
Glu
TTC
[Ensembl]
¡û
>W1610506462
FLQY01000168
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
34075
34150
+
Glu
TTC
[ENA]
¡û
>W1610506467
FLQY01000179
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
171
246
+
Glu
TTC
[ENA]
¡û
>WENV079957
AATO01000009
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
80804
80879
+
Glu
TTC
[ENA]
>WENV079966
AATO01000038
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
8363
8288
-
Glu
TTC
[ENA]
>WENV080012
AATO01000615
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
353
278
-
Glu
TTC
[ENA]
>WENV080017
AATO01000790
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
832
907
+
Glu
TTC
[ENA]
>WENV080021
AATO01000892
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
2857
2932
+
Glu
TTC
[ENA]
>WENV080136
AATO01008292
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
506
581
+
Glu
TTC
[ENA]
>WENV080206
AATO01012468
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
277
352
+
Glu
TTC
[ENA]
>W1710498965
FLQY01000168
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
34075
34150
+
Glu
TTC
[ENA]
¡û
>W1710498970
FLQY01000179
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
171
246
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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