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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304965 (9 seq.)
>W1711386134
MEEY01000056
Planctomycetota
Planctomycetes bacterium SCN 63-9 [MEEY]
3344
3270
-
Met
CAT
[ENA]
¡û
>W1711503634
MKTT01000158
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
14490
14563
+
Met
CAT
[ENA]
¡û
>W1711503635
MKTT01000158
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
14713
14786
+
Met
CAT
[ENA]
¡û
>C171089084
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
3149450
3149522
+
Met
CAT
-
¡û
>C171089085
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
3150022
3150094
+
Met
CAT
-
¡û
>WENV170649299
JRHI01018346
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
908
835
-
Met
CAT
[ENA]
¢þ
>C11111482
CP002353
Planctomycetota
Isosphaera pallida ATCC 43644 [CP002353]
4373515
4373442
-
Met
CAT
[Ensembl]
¡û
>C161033418
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
679030
679102
+
Met
CAT
-
¡û
>C161033419
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
679505
679577
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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