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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30514 (28 seq.)
>W131051969
AMYG01000024
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
25847
25758
-
Ser
TGA
[ENA]
¡û
>W131167537
ARDJ01000001
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
74089
74178
+
Ser
TGA
[ENA]
¡û
>w010171
AAKQ01000002
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
69884
69973
+
Ser
TGA
[ENA]
¡û
>W141092570
AVAF01000010
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
24934
25023
+
Ser
TGA
[ENA]
¡û
>WENV181226084
OFDK01000021
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15724
15635
-
Ser
TGA
[ENA]
¢þ
>C08010927
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
33055
33144
+
Ser
TGA
[Ensembl]
¡û
>C08011027
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
32953
33042
+
Ser
TGA
[Ensembl]
¡û
>WENV170675647
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
27399
27488
+
Ser
TGA
[ENA]
¢þ
>WENV170676886
LDZS01003003
[LDZS] terrestrial metagenome; oil reservoir sample K3
2070
1981
-
Ser
TGA
[ENA]
¢þ
>C191108091
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
428191
428280
+
Ser
TGA
-
¡û
>W09133516
ACPF01000008
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
6006
5917
-
Ser
TGA
[ENA]
¡û
>W09134125
ACQZ01000007
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
12240
12151
-
Ser
TGA
[ENA]
¡û
>W09135852
ACXP01000013
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
10869
10780
-
Ser
TGA
[ENA]
¡û
>W10105926
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
10967
10878
-
Ser
TGA
[ENA]
¡û
>W10120471
ADXD01000007
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
16507
16418
-
Ser
TGA
[ENA]
¡û
>W11108249
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
10967
10878
-
Ser
TGA
[ENA]
¡û
>C11122454
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
32960
33049
+
Ser
TGA
[Ensembl]
¡û
>C11122685
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
32959
33048
+
Ser
TGA
[Ensembl]
¡û
>C11123216
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
31711
31800
+
Ser
TGA
[Ensembl]
¡û
>W11127080
ADXD01000007
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
16507
16418
-
Ser
TGA
[ENA]
¡û
>W11152645
AEYS01000010
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
40161
40072
-
Ser
TGA
[ENA]
¡û
>W121068090
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
302092
302181
+
Ser
TGA
[ENA]
¡û
>W1610612279
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
27399
27488
+
Ser
TGA
[ENA]
¡û
>W1610613182
LGFN01000107
Bacillota
Caldanaerobacter subterraneus [LGFN]
2070
1981
-
Ser
TGA
[ENA]
¡û
>W1710515302
FNBS01000013
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
32307
32396
+
Ser
TGA
[ENA]
¡û
>W1710560352
FONI01000004
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
70700
70789
+
Ser
TGA
[ENA]
¡û
>W1710733785
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
27399
27488
+
Ser
TGA
[ENA]
¡û
>W1710734389
LGFN01000107
Bacillota
Caldanaerobacter subterraneus [LGFN]
2070
1981
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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