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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30517 (76 seq.)
>W1710995418
LQAD01000014
Betaproteobacteria
Cupriavidus metallidurans [LQAD]
362497
362407
-
Ser
GGA
[ENA]
¡û
>W1711044090
LRMT01000261
Betaproteobacteria
Cupriavidus sp. UYMMa02A [LRMT]
19369
19459
+
Ser
GGA
[ENA]
¡û
>W1711168309
LVXY01000005
Betaproteobacteria
Cupriavidus gilardii [LVXY]
327456
327366
-
Ser
GGA
[ENA]
¡û
>W131043688
AMPR01000053
Betaproteobacteria
Cupriavidus sp. HPC(L) [AMPR]
8942
8852
-
Ser
GGA
[ENA]
¡û
>W131063315
ANKP01000031
Betaproteobacteria
Cupriavidus sp. HMR-1 [ANKP]
42586
42496
-
Ser
GGA
[ENA]
¡û
>W131159004
AQUR01000104
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
321669
321579
-
Ser
GGA
[ENA]
¡û
>C018743
CP000352
Betaproteobacteria
Cupriavidus metallidurans CH34 [CP000352]
2483060
2483150
+
Ser
GGA
[Ensembl]
¡û
>WENV180100313
OAOM01007777
[OAOM] sediment metagenome; sediment
285
195
-
Ser
GGA
[ENA]
¢þ
>WENV180100405
OAON01000780
[OAON] sediment metagenome; sediment
3682
3592
-
Ser
GGA
[ENA]
¢þ
>WENV180355042
OBNG01000452
[OBNG] sediment metagenome; sediment
1239
1329
+
Ser
GGA
[ENA]
¢þ
>WENV180355239
OBNH01000057
[OBNH] sediment metagenome; sediment
57655
57565
-
Ser
GGA
[ENA]
¢þ
>WENV180355479
OBNI01000040
[OBNI] sediment metagenome; sediment
7375
7285
-
Ser
GGA
[ENA]
¢þ
>WENV180355760
OBNJ01000132
[OBNJ] sediment metagenome; sediment
18787
18697
-
Ser
GGA
[ENA]
¢þ
>WENV180356130
OBNK01000146
[OBNK] sediment metagenome; sediment
14625
14715
+
Ser
GGA
[ENA]
¢þ
>W141150481
AXAK01000013
Betaproteobacteria
Cupriavidus taiwanensis STM 6018 [AXAK]
88085
87995
-
Ser
GGA
[ENA]
¡û
>W141152453
AXBU01000066
Betaproteobacteria
Cupriavidus metallidurans H1130 [AXBU]
111582
111672
+
Ser
GGA
[ENA]
¡û
>WENV181844069
OGVV01006969
[OGVV] freshwater metagenome; freshwater
934
1024
+
Ser
GGA
[ENA]
¢þ
>C08003762
CU633749
Betaproteobacteria
Cupriavidus taiwanensis LMG 19424 [CU633749]
2149477
2149390
-
Ser
GGA
[Ensembl]
¡û
>WENV170593469
FUFK010887881
[FUFK] metagenome; unknown
131
41
-
Ser
GGA
[ENA]
¢þ
>WENV170965542
MTEU01003959
[MTEU] soil metagenome; naturally attenuated soil
6626
6716
+
Ser
GGA
[ENA]
¢þ
>WENV170965996
MTEV01011587
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1320
1410
+
Ser
GGA
[ENA]
¢þ
>WENV170966061
MTEX01000378
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
4633
4543
-
Ser
GGA
[ENA]
¢þ
>W141485138
JFZD01000072
Betaproteobacteria
Cupriavidus metallidurans [JFZD]
152773
152863
+
Ser
GGA
[ENA]
¡û
>W141485181
JFZE01000036
Betaproteobacteria
Cupriavidus metallidurans [JFZE]
107781
107691
-
Ser
GGA
[ENA]
¡û
>W141485238
JFZF01000022
Betaproteobacteria
Cupriavidus metallidurans [JFZF]
125786
125696
-
Ser
GGA
[ENA]
¡û
>C181134474
CP026544
Betaproteobacteria
Cupriavidus metallidurans Ni-2 [CP026544]
5118271
5118361
+
Ser
GGA
-
¡û
>W09100033
AAAI03000007
Betaproteobacteria
Cupriavidus metallidurans CH34 [AAAI]
305414
305504
+
Ser
GGA
[ENA]
¡û
>C191154516
CP037900
Betaproteobacteria
Cupriavidus metallidurans BS1 [CP037900, CP037901]
2589478
2589568
+
Ser
GGA
-
¡û
>W141818209
JQLI01000008
Betaproteobacteria
Cupriavidus necator A5-1 [JQLI]
3433221
3433131
-
Ser
GGA
[ENA]
¡û
>C141006486
CP006667
Betaproteobacteria
Ralstonia pickettii DTP0602 [CP006667, CP006668, CP006669]
3090366
3090276
-
Ser
GGA
[Ensembl]
¡û
>W1910501684
FYAR01000004
Betaproteobacteria
Cupriavidus metallidurans NDB2Meth2 [FYAR]
362497
362407
-
Ser
GGA
[ENA]
¡û
>W1910501954
FYAX01000013
Betaproteobacteria
Cupriavidus metallidurans NDB4MOL1 [FYAX]
770735
770645
-
Ser
GGA
[ENA]
¡û
>W1911518141
OFSN01000010
Betaproteobacteria
Cupriavidus taiwanensis [OFSN]
512207
512117
-
Ser
GGA
[ENA]
¡û
>W1911518170
OFSO01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFSO]
405756
405666
-
Ser
GGA
[ENA]
¡û
>W1911518234
OFSP01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFSP]
212420
212330
-
Ser
GGA
[ENA]
¡û
>W1911518290
OFSQ01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFSQ]
431788
431698
-
Ser
GGA
[ENA]
¡û
>W1911518334
OFSR01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
316006
315916
-
Ser
GGA
[ENA]
¡û
>W1911518387
OFSS01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFSS]
629159
629069
-
Ser
GGA
[ENA]
¡û
>W1911518514
OFSU01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFSU]
315992
315902
-
Ser
GGA
[ENA]
¡û
>W1911518644
OFSX01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFSX]
590777
590687
-
Ser
GGA
[ENA]
¡û
>W1911518697
OFSY01000016
Betaproteobacteria
Cupriavidus taiwanensis [OFSY]
491656
491566
-
Ser
GGA
[ENA]
¡û
>W1911518722
OFSZ01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFSZ]
57470
57380
-
Ser
GGA
[ENA]
¡û
>W1911518795
OFTA01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
57469
57379
-
Ser
GGA
[ENA]
¡û
>W1911518841
OFTB01000010
Betaproteobacteria
Cupriavidus taiwanensis [OFTB]
76110
76020
-
Ser
GGA
[ENA]
¡û
>W1911518888
OFTC01000009
Betaproteobacteria
Cupriavidus neocaledonicus taiwanensis [OFTC]
321404
321314
-
Ser
GGA
[ENA]
¡û
>W1911518961
OFTD01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFTD]
57469
57379
-
Ser
GGA
[ENA]
¡û
>W1911518999
OFTE01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTE]
230348
230258
-
Ser
GGA
[ENA]
¡û
>W1911519066
OFTF01000014
Betaproteobacteria
Cupriavidus taiwanensis [OFTF]
452075
451985
-
Ser
GGA
[ENA]
¡û
>W1911519120
OFTG01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFTG]
452075
451985
-
Ser
GGA
[ENA]
¡û
>W1911519173
OFTH01000015
Betaproteobacteria
Cupriavidus taiwanensis [OFTH]
452075
451985
-
Ser
GGA
[ENA]
¡û
>W1911519221
OFTI01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFTI]
405738
405648
-
Ser
GGA
[ENA]
¡û
>W1911519276
OFTJ01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
405738
405648
-
Ser
GGA
[ENA]
¡û
>W1911519338
OFTK01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTK]
405738
405648
-
Ser
GGA
[ENA]
¡û
>W1911519387
OFTL01000006
Betaproteobacteria
Cupriavidus taiwanensis [OFTL]
214090
214000
-
Ser
GGA
[ENA]
¡û
>W1911519445
OFTM01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTM]
452075
451985
-
Ser
GGA
[ENA]
¡û
>W1911519501
OFTN01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTN]
315975
315885
-
Ser
GGA
[ENA]
¡û
>W1911519573
OFTO01000013
Betaproteobacteria
Cupriavidus taiwanensis [OFTO]
526199
526109
-
Ser
GGA
[ENA]
¡û
>W1911519618
OFTP01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTP]
524891
524801
-
Ser
GGA
[ENA]
¡û
>W1911519667
OFTQ01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFTQ]
92849
92759
-
Ser
GGA
[ENA]
¡û
>W1911519768
OFTS01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTS]
445147
445057
-
Ser
GGA
[ENA]
¡û
>W1911532290
OGUT01000021
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
63356
63446
+
Ser
GGA
[ENA]
¡û
>W1911532346
OGUU01000011
Betaproteobacteria
Cupriavidus taiwanensis [OGUU]
491656
491566
-
Ser
GGA
[ENA]
¡û
>W1911551385
OVTA01000009
Betaproteobacteria
Cupriavidus taiwanensis [OVTA]
170612
170522
-
Ser
GGA
[ENA]
¡û
>W1810537677
QDFJ01000005
Betaproteobacteria
Cupriavidus metallidurans BS1 [QDFJ]
437932
438022
+
Ser
GGA
[ENA]
¡û
>W1810573226
QEKP01000002
Betaproteobacteria
Cupriavidus alkaliphilus CAG-122 [QEKP]
504097
504007
-
Ser
GGA
[ENA]
¡û
>W1810685741
QKZN01000002
Betaproteobacteria
Cupriavidus alkaliphilus MLR2-44 [QKZN]
118086
118176
+
Ser
GGA
[ENA]
¡û
>W1810696437
QLTI01000002
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
117615
117705
+
Ser
GGA
[ENA]
¡û
>C151070000
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
2198644
2198734
+
Ser
GGA
-
¡û
>W1511483816
JWMB01000020
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
103177
103267
+
Ser
GGA
[ENA]
¡û
>C161078296
CP014844
Betaproteobacteria
Cupriavidus nantongensis X1 [CP014844, CP014845]
3436997
3436907
-
Ser
GGA
[Ensembl]
¡û
>W1610077576
BCZO01000009
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
277151
277241
+
Ser
GGA
[ENA]
¡û
>W1610514373
FMAD01000003
Betaproteobacteria
Cupriavidus alkaliphilus [FMAD]
478784
478694
-
Ser
GGA
[ENA]
¡û
>W1610850075
LQAD01000014
Betaproteobacteria
Cupriavidus metallidurans [LQAD]
362497
362407
-
Ser
GGA
[ENA]
¡û
>W1610978224
LVXY01000005
Betaproteobacteria
Cupriavidus gilardii [LVXY]
327456
327366
-
Ser
GGA
[ENA]
¡û
>W1710075214
BCZO01000009
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
277151
277241
+
Ser
GGA
[ENA]
¡û
>W1710500063
FMAD01000003
Betaproteobacteria
Cupriavidus alkaliphilus [FMAD]
478784
478694
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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