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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305239 (55 seq.)
>W1710865311
LMGO01000005
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
992484
992409
-
Lys
TTT
[ENA]
¡û
>W1710866507
LMHN01000012
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
52805
52880
+
Lys
TTT
[ENA]
¡û
>W1710868089
LMIU01000026
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
70727
70802
+
Lys
TTT
[ENA]
¡û
>W1711077975
LSMI01000068
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
52715
52790
+
Lys
TTT
[ENA]
¡û
>W1711219922
LXPW01000048
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
52696
52771
+
Lys
TTT
[ENA]
¡û
>W1711658934
MQNQ01001978
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
356
281
-
Lys
TTT
[ENA]
¡û
>W1711658935
MQNQ01001980
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
124
199
+
Lys
TTT
[ENA]
¡û
>W1711658936
MQNQ01001982
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
355
280
-
Lys
TTT
[ENA]
¡û
>W1711658937
MQNQ01001984
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
124
199
+
Lys
TTT
[ENA]
¡û
>W1711723084
MTLG01000011
Betaproteobacteria
Achromobacter xylosoxidans [MTLG]
267653
267578
-
Lys
TTT
[ENA]
¡û
>W1711723225
MTLI01000239
Betaproteobacteria
Achromobacter xylosoxidans [MTLI]
7327
7402
+
Lys
TTT
[ENA]
¡û
>C013915
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
1454507
1454582
+
Lys
TTT
[Ensembl]
¡û
>WENV181227973
OFDN01093540
[OFDN] hot springs metagenome; Water
209
134
-
Lys
TTT
[ENA]
¢þ
>W141207217
AZND01000101
Betaproteobacteria
Methylibium sp. T29 [AZND]
10002
10077
+
Lys
TTT
[ENA]
¡û
>W141214262
AZSN01000127
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
9999
10074
+
Lys
TTT
[ENA]
¡û
>WENV183727386
PJTO01039618
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
248
323
+
Lys
TTT
[ENA]
¢þ
>WENV183728010
PJTP01016365
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
566
641
+
Lys
TTT
[ENA]
¢þ
>WENV183733454
PJTY01002250
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
4853
4778
-
Lys
TTT
[ENA]
¢þ
>WENV183734596
PJTZ01022932
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
293
368
+
Lys
TTT
[ENA]
¢þ
>WENV183738236
PJUD01131497
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
289
364
+
Lys
TTT
[ENA]
¢þ
>WENV183738664
PJUE01000073
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
96071
95996
-
Lys
TTT
[ENA]
¢þ
>WENV183740584
PJUF01003834
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2191
2116
-
Lys
TTT
[ENA]
¢þ
>WENV183741343
PJUF01091972
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
83
8
-
Lys
TTT
[ENA]
¢þ
>WENV170706297
LNAP01001906
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21497
21422
-
Lys
TTT
[ENA]
¢þ
>WENV170708555
LNAP01095484
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
636
561
-
Lys
TTT
[ENA]
¢þ
>WENV170784555
MCNE01000667
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2751
2826
+
Lys
TTT
[ENA]
¢þ
>WENV170784641
MCNF01000234
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
6444
6519
+
Lys
TTT
[ENA]
¢þ
>WENV170965452
MTEU01002615
[MTEU] soil metagenome; naturally attenuated soil
2401
2326
-
Lys
TTT
[ENA]
¢þ
>WENV170966663
MTEY01003282
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
831
906
+
Lys
TTT
[ENA]
¢þ
>C181078133
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
864429
864504
+
Lys
TTT
-
¡û
>C181128243
CP026124
Betaproteobacteria
Achromobacter sp. AONIH1 [CP026124]
1933926
1934001
+
Lys
TTT
-
¡û
>C191064763
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
319260
319185
-
Lys
TTT
-
¡û
>W09101371
AAEM01000001
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
237122
237047
-
Lys
TTT
[ENA]
¡û
>W1910890688
NEVL01000001
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
894624
894699
+
Lys
TTT
[ENA]
¡û
>W1910890798
NEVN01000001
Betaproteobacteria
Bordetella genomosp. 5 5 AU14646 [NEVN]
698753
698828
+
Lys
TTT
[ENA]
¡û
>W1910890923
NEVP01000011
Betaproteobacteria
Bordetella genomosp. 5 5 AU10456 [NEVP]
593473
593398
-
Lys
TTT
[ENA]
¡û
>W1910891007
NEVR01000001
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
1461383
1461458
+
Lys
TTT
[ENA]
¡û
>W1911641129
PYAL01000004
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
54030
54105
+
Lys
TTT
[ENA]
¡û
>W1911748832
QWFB01000050
Betaproteobacteria
Achromobacter sp. K91 [QWFB]
12331
12406
+
Lys
TTT
[ENA]
¡û
>W1810448798
PZMK01000643
Betaproteobacteria
Achromobacter xylosoxidans BHW-15 [PZMK]
5873
5948
+
Lys
TTT
[ENA]
¡û
>W1810487668
QAYS01000020
Betaproteobacteria
Achromobacter mucicolens KCJK8006 [QAYS]
6501
6576
+
Lys
TTT
[ENA]
¡û
>W1810917553
QVXO01000015
Betaproteobacteria
Achromobacter xylosoxidans GD003A [QVXO]
53231
53306
+
Lys
TTT
[ENA]
¡û
>W1510019076
BBVB01000007
Betaproteobacteria
Bordetella bronchiseptica KU1201 [BBVB]
30001
29926
-
Lys
TTT
[ENA]
¡û
>C11101497
CP002287
Betaproteobacteria
Achromobacter xylosoxidans A8 [CP002287]
879971
880046
+
Lys
TTT
[Ensembl]
¡û
>W1610047251
BBDD01000018
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
1866
1941
+
Lys
TTT
[ENA]
¡û
>W1610094016
CYTK01000009
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
186675
186600
-
Lys
TTT
[ENA]
¡û
>W121019641
AGUF01000029
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
39105
39030
-
Lys
TTT
[ENA]
¡û
>W1610727657
LMGO01000005
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
992484
992409
-
Lys
TTT
[ENA]
¡û
>W1610728853
LMHN01000012
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
52805
52880
+
Lys
TTT
[ENA]
¡û
>W1610730435
LMIU01000026
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
70727
70802
+
Lys
TTT
[ENA]
¡û
>W1610916991
LSMI01000068
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
52715
52790
+
Lys
TTT
[ENA]
¡û
>W1611004394
LXPW01000048
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
52696
52771
+
Lys
TTT
[ENA]
¡û
>W1710043856
BBDD01000018
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
1866
1941
+
Lys
TTT
[ENA]
¡û
>W1710097059
CYTK01000009
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
186675
186600
-
Lys
TTT
[ENA]
¡û
>W1710541646
FNYM01000011
Betaproteobacteria
Achromobacter sp. NFACC18-2 [FNYM]
178739
178664
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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