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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305254 (64 seq.)
>W1710825536
LLDN01000107
Gammaproteobacteria
Acinetobacter pittii [LLDN]
186866
186793
-
Arg
CCT
[ENA]
¡û
>W1710827215
LLEZ01000046
Gammaproteobacteria
Acinetobacter soli [LLEZ]
50820
50746
-
Arg
CCT
[ENA]
¡û
>W1710829404
LLGF01000002
Gammaproteobacteria
Acinetobacter pittii [LLGF]
47220
47147
-
Arg
CCT
[ENA]
¡û
>W1710833570
LLIO01000183
Gammaproteobacteria
Acinetobacter pittii [LLIO]
4998
5071
+
Arg
CCT
[ENA]
¡û
>W1711064268
LSAK01000005
Gammaproteobacteria
Acinetobacter pittii [LSAK]
85220
85293
+
Arg
CCT
[ENA]
¡û
>W1711125284
LUNC01000087
Gammaproteobacteria
Acinetobacter sp. REDSEA-S21_B14 [LUNC]
3317
3392
+
Arg
CCT
[ENA]
¡û
>W1711126535
LUOR01000057
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 [LUOR]
35754
35829
+
Arg
CCT
[ENA]
¡û
>W1711126607
LUOU01000055
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S42_B15 [LUOU]
452
527
+
Arg
CCT
[ENA]
¡û
>W1711126628
LUOV01000006
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
43849
43774
-
Arg
CCT
[ENA]
¡û
>W1711358011
MDHS01000037
Gammaproteobacteria
Acinetobacter pittii [MDHS]
2200
2127
-
Arg
CCT
[ENA]
¡û
>W1712060257
NGEJ01000094
Gammaproteobacteria
Acinetobacter pittii [NGEJ]
82665
82738
+
Arg
CCT
[ENA]
¡û
>W1712065778
NGIO01000031
Gammaproteobacteria
Acinetobacter pittii [NGIO]
182322
182249
-
Arg
CCT
[ENA]
¡û
>W1712066501
NGJC01000023
Gammaproteobacteria
Acinetobacter pittii [NGJC]
50082
50155
+
Arg
CCT
[ENA]
¡û
>W1712084492
NHRO01000001
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 WCHA52 [NHRO]
465634
465709
+
Arg
CCT
[ENA]
¡û
>W1712084736
NHRR01000012
Gammaproteobacteria
Acinetobacter chinensis WCHA5 [NHRR]
2582
2507
-
Arg
CCT
[ENA]
¡û
>W131039119
AMHC01000031
Gammaproteobacteria
Acinetobacter baumannii AB_1583-8 [AMHC]
11698
11623
-
Arg
CCT
[ENA]
¡û
>W131041431
AMIS01000086
Gammaproteobacteria
Acinetobacter baumannii AB_TG27343 [AMIS]
11909
11834
-
Arg
CCT
[ENA]
¡û
>W131041824
AMIY01000027
Gammaproteobacteria
Acinetobacter calcoaceticus TG19593 [AMIY]
197387
197312
-
Arg
CCT
[ENA]
¡û
>W131112605
APOE01000002
Gammaproteobacteria
Acinetobacter calcoaceticus NIPH 13 [APOE]
251968
251895
-
Arg
CCT
[ENA]
¡û
>W131115504
APPU01000016
Gammaproteobacteria
Acinetobacter soli CIP 110264 [APPU]
92377
92452
+
Arg
CCT
[ENA]
¡û
>W131116373
APQH01000001
Gammaproteobacteria
Acinetobacter calcoaceticus ANC 3680 [APQH]
201966
201891
-
Arg
CCT
[ENA]
¡û
>W131169083
AREL01000008
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [AREL]
109992
110067
+
Arg
CCT
[ENA]
¡û
>W131206941
ATGI01000006
Gammaproteobacteria
Acinetobacter rudis CIP 110305 [ATGI]
283018
282943
-
Arg
CCT
[ENA]
¡û
>WENV180087818
MPME02127562
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
946
871
-
Arg
CCT
[ENA]
¢þ
>WENV180091178
MPMF02180466
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
89086
89161
+
Arg
CCT
[ENA]
¢þ
>WENV181841324
OGVR01009125
[OGVR] freshwater metagenome; freshwater
779
854
+
Arg
CCT
[ENA]
¢þ
>WENV183794366
PVBE010091037
[PVBE] marine metagenome; water
89081
89156
+
Arg
CCT
[ENA]
¢þ
>WENV170398285
CEUD01146541
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
368
293
-
Arg
CCT
[ENA]
¢þ
>W141440966
JEWG01000001
Gammaproteobacteria
Acinetobacter sp. 1295259 1295259 [JEWG]
158429
158356
-
Arg
CCT
[ENA]
¡û
>W141443618
JEXG01000009
Gammaproteobacteria
Acinetobacter sp. 809848 809848 [JEXG]
44254
44181
-
Arg
CCT
[ENA]
¡û
>WENV170729604
LULG01000016
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
44173
44098
-
Arg
CCT
[ENA]
¢þ
>WENV170735165
LULL01000132
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
18589
18664
+
Arg
CCT
[ENA]
¢þ
>WENV170735199
LULL01000227
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
15478
15403
-
Arg
CCT
[ENA]
¢þ
>WENV170740941
LULS01002240
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
2188
2113
-
Arg
CCT
[ENA]
¢þ
>WENV170744413
LULX01001023
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
3317
3392
+
Arg
CCT
[ENA]
¢þ
>WENV170759496
LUMS01033955
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
421
346
-
Arg
CCT
[ENA]
¢þ
>WENV170760147
LUMT01004464
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
452
527
+
Arg
CCT
[ENA]
¢þ
>WENV170762166
LUMW01001613
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
2449
2524
+
Arg
CCT
[ENA]
¢þ
>W141483008
JFXZ01000009
Gammaproteobacteria
Acinetobacter sp. 883425 883425 [JFXZ]
42448
42375
-
Arg
CCT
[ENA]
¡û
>W141483335
JFYC01000012
Gammaproteobacteria
Acinetobacter sp. 742879 742879 [JFYC]
79511
79584
+
Arg
CCT
[ENA]
¡û
>C181167127
CP028574
Gammaproteobacteria
Acinetobacter pittii WCHAP005046 [CP028574]
481158
481085
-
Arg
CCT
-
¡û
>C191023516
CP023020
Gammaproteobacteria
Acinetobacter baumannii 9201 [CP023020]
1992957
1993030
+
Arg
CCT
-
¡û
>C191084833
CP032134
Gammaproteobacteria
Acinetobacter chinensis WCHAc010005 [CP032134]
2735373
2735448
+
Arg
CCT
-
¡û
>C191084980
CP032143
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 [CP032143]
2674791
2674866
+
Arg
CCT
-
¡û
>W141557135
JHUX01000003
Gammaproteobacteria
Alkanindiges illinoisensis DSM 15370 [JHUX]
1556142
1556215
+
Arg
CCT
[ENA]
¡û
>W1910871585
NCXF01000003
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
57275
57200
-
Arg
CCT
[ENA]
¡û
>W1510012683
BBNM01000009
Gammaproteobacteria
Acinetobacter soli KCTC 22184 [BBNM]
53225
53150
-
Arg
CCT
[ENA]
¡û
>W1510015968
BBRX01000025
Gammaproteobacteria
Acinetobacter rudis DSM 24031 [BBRX]
26320
26245
-
Arg
CCT
[ENA]
¡û
>W1510017893
BBTR01000014
Gammaproteobacteria
Acinetobacter pittii NBRC 110508 [BBTR]
4307
4234
-
Arg
CCT
[ENA]
¡û
>W1510018261
BBTY01000014
Gammaproteobacteria
Acinetobacter pittii NBRC 110506 [BBTY]
47910
47983
+
Arg
CCT
[ENA]
¡û
>W1511347920
JRKA01000042
Gammaproteobacteria
Acinetobacter sp. ZOR0008 [JRKA]
43120
43047
-
Arg
CCT
[ENA]
¡û
>W1511463408
JVOR01000105
Gammaproteobacteria
Acinetobacter sp. 243_ASPC [JVOR]
52363
52288
-
Arg
CCT
[ENA]
¡û
>W1511642658
LDWD01000017
Gammaproteobacteria
Acinetobacter sp. C15 [LDWD]
55124
55199
+
Arg
CCT
[ENA]
¡û
>C161075289
CP014651
Gammaproteobacteria
Acinetobacter sp. DUT-2 [CP014651]
710877
710804
-
Arg
CCT
-
¡û
>W1610060999
BCMB01000016
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
71140
71215
+
Arg
CCT
[ENA]
¡û
>W1610688812
LLDN01000107
Gammaproteobacteria
Acinetobacter pittii [LLDN]
186866
186793
-
Arg
CCT
[ENA]
¡û
>W1610690492
LLEZ01000046
Gammaproteobacteria
Acinetobacter soli [LLEZ]
50820
50746
-
Arg
CCT
[ENA]
¡û
>W1610692681
LLGF01000002
Gammaproteobacteria
Acinetobacter pittii [LLGF]
47220
47147
-
Arg
CCT
[ENA]
¡û
>W1610696847
LLIO01000183
Gammaproteobacteria
Acinetobacter pittii [LLIO]
4998
5071
+
Arg
CCT
[ENA]
¡û
>W1610936217
LUNC01000087
Gammaproteobacteria
Acinetobacter sp. REDSEA-S21_B14 [LUNC]
3317
3392
+
Arg
CCT
[ENA]
¡û
>W1610937468
LUOR01000057
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 [LUOR]
35754
35829
+
Arg
CCT
[ENA]
¡û
>W1610937540
LUOU01000055
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S42_B15 [LUOU]
452
527
+
Arg
CCT
[ENA]
¡û
>W1610937561
LUOV01000006
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
43849
43774
-
Arg
CCT
[ENA]
¡û
>W1710058295
BCMB01000016
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
71140
71215
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK