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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305292 (33 seq.)
>W131159439
AQVB01000003
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
100368
100443
+
Phe
GAA
[ENA]
¡û
>W1711116090
LUAS01000116
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
32537
32612
+
Phe
GAA
[ENA]
¡û
>W131169133
AREM01000047
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
10324
10399
+
Phe
GAA
[ENA]
¡û
>W1711185159
LWNE01000001
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
99540
99615
+
Phe
GAA
[ENA]
¡û
>WENV181378492
OFRB01011323
[OFRB] wastewater metagenome; Exp Tend CN 0WW
855
930
+
Phe
GAA
[ENA]
¢þ
>W141194208
AYSV01000124
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
4127
4052
-
Phe
GAA
[ENA]
¡û
>W141200375
AYXT01000001
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
746591
746666
+
Phe
GAA
[ENA]
¡û
>WENV170577305
FRDC01004354
[FRDC] freshwater metagenome; water
71163
71238
+
Phe
GAA
[ENA]
¢þ
>WENV170688956
LFRM01269945
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
21304
21229
-
Phe
GAA
[ENA]
¢þ
>WENV170690621
LFRM01352650
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4551
4626
+
Phe
GAA
[ENA]
¢þ
>WENV170717332
LSQX01032073
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
197
272
+
Phe
GAA
[ENA]
¢þ
>WENV170717546
LSQX01040130
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
21463
21388
-
Phe
GAA
[ENA]
¢þ
>WENV170718568
LSQX01081856
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
103945
103870
-
Phe
GAA
[ENA]
¢þ
>WENV170720126
LSQX01142050
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
27965
27890
-
Phe
GAA
[ENA]
¢þ
>WENV170721758
LSQX01202946
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
779
854
+
Phe
GAA
[ENA]
¢þ
>WENV170724077
LSQX01292363
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13525
13600
+
Phe
GAA
[ENA]
¢þ
>C181106462
CP024847
Betaproteobacteria
Aquella oligotrophica DSM 100970 [CP024847]
2742049
2741974
-
Phe
GAA
-
¡û
>C181152581
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
2073692
2073767
+
Phe
GAA
-
¡û
>C181195929
CP031124
Betaproteobacteria
Ephemeroptericola cinctiostellae F02 [CP031124]
963712
963637
-
Phe
GAA
-
¡û
>W141562691
JHZJ01000010
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
6198
6273
+
Phe
GAA
[ENA]
¡û
>W1910225787
FMSW01000007
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
191437
191362
-
Phe
GAA
[ENA]
¡û
>W1910891699
NEXS01000011
Betaproteobacteria
Advenella sp. S44 [NEXS]
269091
269166
+
Phe
GAA
[ENA]
¡û
>W1911595537
PNGK01000006
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
29338
29263
-
Phe
GAA
[ENA]
¡û
>C151004927
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
4273237
4273312
+
Phe
GAA
[Ensembl]
¡û
>C151046331
CP009238
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [CP009238]
192520
192445
-
Phe
GAA
[Ensembl]
¡û
>W1511351529
JRNI01000013
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
16504
16429
-
Phe
GAA
[ENA]
¡û
>W1511458933
JVJW01000048
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
1998
1923
-
Phe
GAA
[ENA]
¡û
>W1511461250
JVMH01000095
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
32548
32623
+
Phe
GAA
[ENA]
¡û
>W11171200
AFQG01000026
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
15713
15638
-
Phe
GAA
[ENA]
¡û
>C121014508
CP003555
Betaproteobacteria
Advenella kashmirensis WT001 [CP003555]
3926461
3926536
+
Phe
GAA
[Ensembl]
¡û
>W1610606576
LFTA01000162
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
21304
21229
-
Phe
GAA
[ENA]
¡û
>W1710004117
AFWK01000054
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [AFWK]
5792
5867
+
Phe
GAA
[ENA]
¡û
>W1710727863
LFTA01000162
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
21304
21229
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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