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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30532 (10 seq.)
>C010010
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
3861510
3861599
+
Ser
CGA
[Ensembl]
¡û
>C010093
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
82025
82114
+
Ser
CGA
[Ensembl]
¡û
>WENV170671736
LAHU01143583
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
565
654
+
Ser
CGA
[ENA]
¢þ
>C191000602
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
66451
66540
+
Ser
CGA
-
¡û
>W09100219
AAAS03000003
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
576334
576423
+
Ser
CGA
[ENA]
¡û
>C10107435
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
50214
50303
+
Ser
CGA
[Ensembl]
¡û
>W1511501004
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
3159106
3159017
-
Ser
CGA
[ENA]
¡û
>C161025434
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
2076902
2076991
+
Ser
CGA
[Ensembl]
¡û
>C161080249
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
3499331
3499242
-
Ser
CGA
-
¡û
>W121010744
AGJM01000057
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
11550
11639
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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