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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305334 (31 seq.)
>W1710821618
LKTP01000037
Bacteroidota
Salegentibacter mishustinae [LKTP]
1759
1683
-
Met
CAT
[ENA]
¡û
>W131229980
AUHF01000005
Bacteroidota
Christiangramia portivictoriae DSM 23547 [AUHF]
173548
173472
-
Met
CAT
[ENA]
¡û
>W131230015
AUHG01000012
Bacteroidota
Christiangramia echinicola DSM 19838 [AUHG]
275212
275288
+
Met
CAT
[ENA]
¡û
>W131230773
AUHX01000001
Bacteroidota
Mesonia mobilis DSM 19841 [AUHX]
560252
560326
+
Met
CAT
[ENA]
¡û
>W1711696267
MSJR01000006
Bacteroidota
Salegentibacter sediminis K5023 [MSJR]
116219
116145
-
Met
CAT
[ENA]
¡û
>C009901
CU207366
Bacteroidota
Christiangramia forsetii KT0803 [CU207366]
1489410
1489334
-
Met
CAT
[Ensembl]
¡û
>C171018911
CP012872
Bacteroidota
Salegentibacter sp. T436 [CP012872]
3029397
3029471
+
Met
CAT
-
¡û
>C171047830
CP016359
Bacteroidota
Christiangramia flava JLT2011 [CP016359]
3458599
3458523
-
Met
CAT
-
¡û
>C171074037
CP018153
Bacteroidota
Christiangramia salexigens LPB0144 [CP018153]
993514
993590
+
Met
CAT
-
¡û
>WENV170203521
CEPS01060954
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
648
574
-
Met
CAT
[ENA]
¢þ
>WENV170476385
CEVI01105885
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
275
351
+
Met
CAT
[ENA]
¢þ
>WENV170477641
CEVJ01092160
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
558
484
-
Met
CAT
[ENA]
¢þ
>WENV170591298
FUFK010760340
[FUFK] metagenome; unknown
1799
1875
+
Met
CAT
[ENA]
¢þ
>WENV170666603
JYMV01038666
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2305
2229
-
Met
CAT
[ENA]
¢þ
>WENV170935904
MDTG01265717
[MDTG] marine metagenome; seawater
30
104
+
Met
CAT
[ENA]
¢þ
>C181161938
CP028136
Bacteroidota
Christiangramia fulva SH35 [CP028136]
3364100
3364174
+
Met
CAT
-
¡û
>W141818626
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
1850465
1850391
-
Met
CAT
[ENA]
¡û
>W141821582
JQNQ01000001
Bacteroidota
Salegentibacter sp. Hel_I_6 [JQNQ]
119800
119876
+
Met
CAT
[ENA]
¡û
>W1910627020
LKTS01000044
Bacteroidota
Salegentibacter salinarum KCTC 12975 [LKTS]
86664
86588
-
Met
CAT
[ENA]
¡û
>W1910634598
LLKN01000002
Bacteroidota
Salegentibacter mishustinae DSM 23404 [LLKN]
1308868
1308794
-
Met
CAT
[ENA]
¡û
>W1810504132
QBKQ01000002
Bacteroidota
Christiangramia gaetbulicola DSM 23082 [QBKQ]
470607
470681
+
Met
CAT
[ENA]
¡û
>W1810684814
QKYV01000005
Bacteroidota
Mesonia algae DSM 15361 [QKYV]
178854
178780
-
Met
CAT
[ENA]
¡û
>W1810686153
QKZW01000006
Bacteroidota
Salegentibacter mishustinae DSM 23404 [QKZW]
280305
280379
+
Met
CAT
[ENA]
¡û
>W1610685580
LKTP01000037
Bacteroidota
Salegentibacter mishustinae [LKTP]
1759
1683
-
Met
CAT
[ENA]
¡û
>W1710010689
AMRU01000016
Bacteroidota
Christiangramia flava JLT2011 [AMRU]
77699
77775
+
Met
CAT
[ENA]
¡û
>W1710557292
FOKV01000007
Bacteroidota
Zunongwangia mangrovi [FOKV]
29804
29730
-
Met
CAT
[ENA]
¡û
>W1710561637
FOOH01000018
Bacteroidota
Salegentibacter agarivorans [FOOH]
69206
69282
+
Met
CAT
[ENA]
¡û
>W1710570866
FOVL01000003
Bacteroidota
Salegentibacter flavus [FOVL]
21374
21448
+
Met
CAT
[ENA]
¡û
>W1710584697
FQVT01000011
Bacteroidota
Salegentibacter echinorum [FQVT]
30782
30708
-
Met
CAT
[ENA]
¡û
>W1710603306
FUYY01000001
Bacteroidota
Salegentibacter holothuriorum [FUYY]
406988
407064
+
Met
CAT
[ENA]
¡û
>W1710603479
FUZC01000004
Bacteroidota
Salegentibacter salinarum [FUZC]
87015
86939
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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