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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305336 (36 seq.)
>W1711055573
LRUZ01000040
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
36870
36945
+
Cys
GCA
[ENA]
¡û
>WENV180391203
OBPM01038602
[OBPM] marine metagenome; ENVO:00002010
325
250
-
Cys
GCA
[ENA]
¢þ
>C08000263
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
2103790
2103865
+
Cys
GCA
[Ensembl]
¡û
>WENV170658113
JTFP01055848
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
357
282
-
Cys
GCA
[ENA]
¢þ
>WENV170723080
LSQX01254394
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
75
150
+
Cys
GCA
[ENA]
¢þ
>C181199826
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
275162
275087
-
Cys
GCA
-
¡û
>C191084435
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2565947
2565872
-
Cys
GCA
-
¡û
>C191084591
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2405319
2405244
-
Cys
GCA
-
¡û
>C191122826
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1663183
1663258
+
Cys
GCA
-
¡û
>C191147100
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1725888
1725963
+
Cys
GCA
-
¡û
>C191149081
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1841140
1841215
+
Cys
GCA
-
¡û
>C141005641
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1984788
1984863
+
Cys
GCA
[Ensembl]
¡û
>W1911200218
NREO01000005
Campylobacterota
Arcobacter suis CECT7833 [NREO]
140802
140877
+
Cys
GCA
[ENA]
¡û
>W1911200292
NREP01000014
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
50360
50287
-
Cys
GCA
[ENA]
¡û
>W1911426150
NXIC01000002
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
82869
82794
-
Cys
GCA
[ENA]
¡û
>W1911426315
NXIG01000003
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
146345
146420
+
Cys
GCA
[ENA]
¡û
>W1911576111
PDJT01000032
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
43591
43516
-
Cys
GCA
[ENA]
¡û
>W1911576527
PDKD01000001
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
231193
231268
+
Cys
GCA
[ENA]
¡û
>W1911746058
QVQX01000010
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
35934
36009
+
Cys
GCA
[ENA]
¡û
>W1911775381
QXNB01000016
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
21315
21390
+
Cys
GCA
[ENA]
¡û
>W1810584104
QEYG01000028
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
2989
2914
-
Cys
GCA
[ENA]
¡û
>W1810584150
QEYH01000004
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
73295
73220
-
Cys
GCA
[ENA]
¡û
>W1510762870
JAIR01000048
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
297
372
+
Cys
GCA
[ENA]
¡û
>W1510762902
JAIS01000050
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
252
327
+
Cys
GCA
[ENA]
¡û
>W1510762984
JAIV01000038
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
186
261
+
Cys
GCA
[ENA]
¡û
>W11143305
AEPT01000038
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
21218
21293
+
Cys
GCA
[ENA]
¡û
>W11167751
AFNL01000006
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
57130
57055
-
Cys
GCA
[ENA]
¡û
>W1610584501
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
264389
264314
-
Cys
GCA
[ENA]
¡û
>W1610584919
LCUH01000004
Campylobacterota
Aliarcobacter thereius [LCUH]
113512
113437
-
Cys
GCA
[ENA]
¡û
>W1610586368
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
110544
110469
-
Cys
GCA
[ENA]
¡û
>W1610586406
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
126027
125952
-
Cys
GCA
[ENA]
¡û
>W1610896619
LRUZ01000040
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
36870
36945
+
Cys
GCA
[ENA]
¡û
>W1710703718
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
264389
264314
-
Cys
GCA
[ENA]
¡û
>W1710704110
LCUH01000004
Campylobacterota
Aliarcobacter thereius [LCUH]
113512
113437
-
Cys
GCA
[ENA]
¡û
>W1710705498
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
110544
110469
-
Cys
GCA
[ENA]
¡û
>W1710705536
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
126027
125952
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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