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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305478 (18 seq.)
>W1711055085
LRUI01000003
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
96303
96378
+
Glu
TTC
[ENA]
¡û
>W1711055086
LRUI01000003
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
96576
96651
+
Glu
TTC
[ENA]
¡û
>W1711055087
LRUI01000003
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
96764
96839
+
Glu
TTC
[ENA]
¡û
>C171066074
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1498813
1498888
+
Glu
TTC
-
¡û
>C171066075
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1499086
1499161
+
Glu
TTC
-
¡û
>C171066076
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1499274
1499349
+
Glu
TTC
-
¡û
>w027978
ABCQ01000096
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
4728
4805
+
Glu
TTC
[ENA]
¡û
>w027885
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
98167
98090
-
Glu
TTC
[ENA]
¡û
>w027883
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
193812
193735
-
Glu
TTC
[ENA]
¡û
>WENV170924498
MDTG01066840
[MDTG] marine metagenome; seawater
193
118
-
Glu
TTC
[ENA]
¢þ
>C181204185
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3256499
3256574
+
Glu
TTC
-
¡û
>C181204225
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3016268
3016193
-
Glu
TTC
-
¡û
>C181204226
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3001498
3001423
-
Glu
TTC
-
¡û
>C181204236
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2857179
2857104
-
Glu
TTC
-
¡û
>W1810157533
PJCA01000022
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
177
102
-
Glu
TTC
[ENA]
¡û
>W1610896131
LRUI01000003
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
96303
96378
+
Glu
TTC
[ENA]
¡û
>W1610896132
LRUI01000003
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
96576
96651
+
Glu
TTC
[ENA]
¡û
>W1610896133
LRUI01000003
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
96764
96839
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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