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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30549 (35 seq.)
>W131037592
AMFF01000100
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
13275
13365
+
Ser
GGA
[ENA]
¡û
>W131038475
AMGC01000333
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
3809
3899
+
Ser
GGA
[ENA]
¡û
>W1711138276
LVCQ01000070
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
7819
7729
-
Ser
GGA
[ENA]
¡û
>W131195158
ASSK01000015
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
15755
15665
-
Ser
GGA
[ENA]
¡û
>C171026520
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
26400
26310
-
Ser
GGA
-
¡û
>C171026576
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
156930
156840
-
Ser
GGA
-
¡û
>C171026629
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
999789
999699
-
Ser
GGA
-
¡û
>C171026684
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
996850
996760
-
Ser
GGA
-
¡û
>C171026712
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
3055005
3055095
+
Ser
GGA
-
¡û
>C171026745
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
43587
43677
+
Ser
GGA
-
¡û
>C171026801
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
43619
43709
+
Ser
GGA
-
¡û
>C171026864
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
702103
702193
+
Ser
GGA
-
¡û
>C171026951
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
2678006
2677916
-
Ser
GGA
-
¡û
>C171026984
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
1258001
1258091
+
Ser
GGA
-
¡û
>C171027025
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
43620
43710
+
Ser
GGA
-
¡û
>C171027088
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
702102
702192
+
Ser
GGA
-
¡û
>C171027144
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
702102
702192
+
Ser
GGA
-
¡û
>C171027208
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
1258474
1258564
+
Ser
GGA
-
¡û
>W141221218
AZYQ02000180
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
24165
24075
-
Ser
GGA
[ENA]
¡û
>WENV170874086
MDTB01241470
[MDTB] marine metagenome; seawater
1708
1798
+
Ser
GGA
[ENA]
¢þ
>C191116627
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
1085209
1085299
+
Ser
GGA
-
¡û
>W1911652731
QBEV01000039
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
4338
4248
-
Ser
GGA
[ENA]
¡û
>W1810054377
PDFD01000052
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
16005
15915
-
Ser
GGA
[ENA]
¡û
>C151086985
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
1696753
1696843
+
Ser
GGA
[Ensembl]
¡û
>C151095294
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
1257999
1258089
+
Ser
GGA
-
¡û
>W1511336314
JRAD02000039
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
24129
24039
-
Ser
GGA
[ENA]
¡û
>W1511337050
JRAV02000037
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
23071
22981
-
Ser
GGA
[ENA]
¡û
>W1511346416
JRHD01000043
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
15735
15645
-
Ser
GGA
[ENA]
¡û
>W1511346870
JRHP01000062
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
15909
15819
-
Ser
GGA
[ENA]
¡û
>W1511657164
LELB01000150
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
16036
15946
-
Ser
GGA
[ENA]
¡û
>C161042057
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
1957542
1957452
-
Ser
GGA
[Ensembl]
¡û
>C161062469
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
1258187
1258277
+
Ser
GGA
-
¡û
>C161063136
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
1265897
1265987
+
Ser
GGA
-
¡û
>WENV056836
AACY023268224
Marine microbial communities from Global Ocean Sampling (GOS)
46
136
+
Ser
GGA
[ENA]
>W1610949362
LVCQ01000070
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
7819
7729
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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