This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30580 (81 seq.)
>W1710872920
LMMJ01000007
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
457824
457735
-
Ser
CGA
[ENA]
¡û
>W1710875862
LMOS01000007
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
15117
15028
-
Ser
CGA
[ENA]
¡û
>W1710876077
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1134775
1134686
-
Ser
CGA
[ENA]
¡û
>W1710876835
LMPO01000012
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
129745
129656
-
Ser
CGA
[ENA]
¡û
>W131110263
APJN01000013
Actinomycetota
Curtobacterium flaccumfaciens UCD-AKU [APJN]
101818
101729
-
Ser
CGA
[ENA]
¡û
>W1711343393
MCIG01000060
Actinomycetota
Curtobacterium sp. UCD-KPL2560 [MCIG]
13944
13855
-
Ser
CGA
[ENA]
¡û
>W1711455993
MJAK01000003
Actinomycetota
Curtobacterium sp. ER1/6 [MJAK]
45736
45825
+
Ser
CGA
[ENA]
¡û
>W1711460921
MJGI01000027
Actinomycetota
Curtobacterium sp. MCBA15_001 [MJGI]
93988
94077
+
Ser
CGA
[ENA]
¡û
>W1711460927
MJGJ01000001
Actinomycetota
Curtobacterium sp. MCBA15_003 [MJGJ]
470370
470459
+
Ser
CGA
[ENA]
¡û
>W1711460974
MJGK01000007
Actinomycetota
Curtobacterium sp. MCBA15_004 [MJGK]
30093
30182
+
Ser
CGA
[ENA]
¡û
>W1711461029
MJGL01000008
Actinomycetota
Curtobacterium sp. MCBA15_005 [MJGL]
84283
84192
-
Ser
CGA
[ENA]
¡û
>W1711461067
MJGM01000001
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
46554
46465
-
Ser
CGA
[ENA]
¡û
>W1711461137
MJGN01000045
Actinomycetota
Curtobacterium sp. MCBA15_008 [MJGN]
52105
52194
+
Ser
CGA
[ENA]
¡û
>W1711461167
MJGO01000037
Actinomycetota
Curtobacterium sp. MCBA15_009 [MJGO]
525258
525347
+
Ser
CGA
[ENA]
¡û
>W1711461205
MJGP01000008
Actinomycetota
Curtobacterium sp. MCBA15_012 [MJGP]
125887
125798
-
Ser
CGA
[ENA]
¡û
>W1711461271
MJGQ01000021
Actinomycetota
Curtobacterium sp. MCBA15_013 [MJGQ]
13034
13123
+
Ser
CGA
[ENA]
¡û
>W1711461316
MJGR01000045
Actinomycetota
Curtobacterium sp. MCBA15_016 [MJGR]
92958
92869
-
Ser
CGA
[ENA]
¡û
>W1711461386
MJGT01000047
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
177857
177946
+
Ser
CGA
[ENA]
¡û
>W1711461446
MJGU01000022
Actinomycetota
Curtobacterium sp. MMLR14_006 [MJGU]
85776
85687
-
Ser
CGA
[ENA]
¡û
>W1711461504
MJGV01000079
Actinomycetota
Curtobacterium sp. MMLR14_010 [MJGV]
233595
233684
+
Ser
CGA
[ENA]
¡û
>W1711461592
MJGX01000107
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
118777
118866
+
Ser
CGA
[ENA]
¡û
>C171063827
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
1524495
1524406
-
Ser
CGA
-
¡û
>C171083606
CP018783
Actinomycetota
Curtobacterium pusillum AA3 [CP018783]
2587128
2587217
+
Ser
CGA
-
¡û
>W141223017
BACW01000545
Actinomycetota
Curtobacterium sp. B8 [BACW]
55813
55724
-
Ser
CGA
[ENA]
¡û
>W141223155
BACZ01000538
Actinomycetota
Curtobacterium sp. B18 [BACZ]
6970
7059
+
Ser
CGA
[ENA]
¡û
>C191011694
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
159974
160063
+
Ser
CGA
-
¡û
>C191055968
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
152137
152226
+
Ser
CGA
-
¡û
>W141702223
JMLI01000016
Actinomycetota
Curtobacterium sp. UNCCL17 [JMLI]
372821
372910
+
Ser
CGA
[ENA]
¡û
>W1911496228
OCMI01000005
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
155822
155733
-
Ser
CGA
[ENA]
¡û
>W1911631224
PUEZ01000002
Actinomycetota
Curtobacterium flaccumfaciens pv. flaccumfaciens CFBP3418 [PUEZ]
157258
157169
-
Ser
CGA
[ENA]
¡û
>W1911681973
QKLC01000001
Actinomycetota
Curtobacterium sp. MCPF17_003 [QKLC]
27590
27679
+
Ser
CGA
[ENA]
¡û
>W1911682097
QKLI01000015
Actinomycetota
Curtobacterium sp. MCBD17_030 [QKLI]
49491
49402
-
Ser
CGA
[ENA]
¡û
>W1911685026
QKSD01000006
Actinomycetota
Curtobacterium sp. MCPF17_052 [QKSD]
148952
148863
-
Ser
CGA
[ENA]
¡û
>W1911685072
QKSE01000008
Actinomycetota
Curtobacterium sp. MCPF17_051 [QKSE]
147794
147705
-
Ser
CGA
[ENA]
¡û
>W1911685127
QKSF01000008
Actinomycetota
Curtobacterium sp. MCPF17_047 [QKSF]
148889
148800
-
Ser
CGA
[ENA]
¡û
>W1911685172
QKSG01000004
Actinomycetota
Curtobacterium sp. MCPF17_031 [QKSG]
8636
8547
-
Ser
CGA
[ENA]
¡û
>W1911685233
QKSH01000030
Actinomycetota
Curtobacterium sp. MCPF17_021 [QKSH]
19428
19517
+
Ser
CGA
[ENA]
¡û
>W1911685238
QKSI01000001
Actinomycetota
Curtobacterium sp. MCPF17_002 [QKSI]
52453
52542
+
Ser
CGA
[ENA]
¡û
>W1911685311
QKSJ01000006
Actinomycetota
Curtobacterium sp. MCPF17_018 [QKSJ]
45485
45396
-
Ser
CGA
[ENA]
¡û
>W1911685364
QKSK01000011
Actinomycetota
Curtobacterium sp. MCPF17_011 [QKSK]
81042
80953
-
Ser
CGA
[ENA]
¡û
>W1911685381
QKSL01000001
Actinomycetota
Curtobacterium sp. MCPF17_001 [QKSL]
149355
149266
-
Ser
CGA
[ENA]
¡û
>W1911685801
QKTR01000020
Actinomycetota
Curtobacterium sp. MCBD17_026 [QKTR]
16836
16925
+
Ser
CGA
[ENA]
¡û
>W1810675492
QKLE01000030
Actinomycetota
Curtobacterium sp. MCSS17_011 [QKLE]
27259
27348
+
Ser
CGA
[ENA]
¡û
>W1810675605
QKLH01000003
Actinomycetota
Curtobacterium sp. MCLR17_043 [QKLH]
79654
79565
-
Ser
CGA
[ENA]
¡û
>W1810681019
QKSO01000001
Actinomycetota
Curtobacterium sp. MCSS17_006 [QKSO]
381898
381987
+
Ser
CGA
[ENA]
¡û
>W1810681067
QKSP01000001
Actinomycetota
Curtobacterium sp. MCSS17_005 [QKSP]
32630
32541
-
Ser
CGA
[ENA]
¡û
>W1810681182
QKSQ01000036
Actinomycetota
Curtobacterium sp. MCSS17_016 [QKSQ]
27359
27448
+
Ser
CGA
[ENA]
¡û
>W1810681277
QKSS01000034
Actinomycetota
Curtobacterium sp. MCJR17_020 [QKSS]
23701
23790
+
Ser
CGA
[ENA]
¡û
>W1810681325
QKST01000031
Actinomycetota
Curtobacterium sp. MCLR17_007 [QKST]
12227
12138
-
Ser
CGA
[ENA]
¡û
>W1810681333
QKSU01000001
Actinomycetota
Curtobacterium sp. MCLR17_059 [QKSU]
154105
154016
-
Ser
CGA
[ENA]
¡û
>W1810681393
QKSV01000007
Actinomycetota
Curtobacterium sp. MCLR17_058 [QKSV]
53852
53941
+
Ser
CGA
[ENA]
¡û
>W1810681440
QKSW01000009
Actinomycetota
Curtobacterium sp. MCLR17_057 [QKSW]
26608
26697
+
Ser
CGA
[ENA]
¡û
>W1810681490
QKSX01000009
Actinomycetota
Curtobacterium sp. MCLR17_055 [QKSX]
27406
27495
+
Ser
CGA
[ENA]
¡û
>W1810681538
QKSY01000012
Actinomycetota
Curtobacterium sp. MCLR17_054 [QKSY]
19189
19278
+
Ser
CGA
[ENA]
¡û
>W1810681586
QKSZ01000010
Actinomycetota
Curtobacterium sp. MCLR17_053 [QKSZ]
19216
19305
+
Ser
CGA
[ENA]
¡û
>W1810681647
QKTA01000017
Actinomycetota
Curtobacterium sp. MCLR17_051 [QKTA]
19196
19285
+
Ser
CGA
[ENA]
¡û
>W1810681672
QKTB01000009
Actinomycetota
Curtobacterium sp. MCLR17_045 [QKTB]
98430
98341
-
Ser
CGA
[ENA]
¡û
>W1810681734
QKTC01000020
Actinomycetota
Curtobacterium sp. MCLR17_044 [QKTC]
63633
63544
-
Ser
CGA
[ENA]
¡û
>W1810681769
QKTD01000006
Actinomycetota
Curtobacterium sp. MCLR17_042 [QKTD]
27145
27234
+
Ser
CGA
[ENA]
¡û
>W1810681818
QKTE01000009
Actinomycetota
Curtobacterium sp. MCLR17_040 [QKTE]
19348
19437
+
Ser
CGA
[ENA]
¡û
>W1810681870
QKTF01000009
Actinomycetota
Curtobacterium sp. MCLR17_039 [QKTF]
95606
95517
-
Ser
CGA
[ENA]
¡û
>W1810681901
QKTG01000020
Actinomycetota
Curtobacterium sp. MCLR17_036 [QKTG]
44022
43933
-
Ser
CGA
[ENA]
¡û
>W1810681961
QKTH01000014
Actinomycetota
Curtobacterium sp. MCLR17_034 [QKTH]
78166
78077
-
Ser
CGA
[ENA]
¡û
>W1810682000
QKTI01000008
Actinomycetota
Curtobacterium sp. MCLR17_032 [QKTI]
115539
115450
-
Ser
CGA
[ENA]
¡û
>W1810682054
QKTJ01000015
Actinomycetota
Curtobacterium sp. MCLR17_031 [QKTJ]
26665
26754
+
Ser
CGA
[ENA]
¡û
>W1810762709
QQAO01000007
Actinomycetota
Curtobacterium sp. AG1037 [QQAO]
53380
53469
+
Ser
CGA
[ENA]
¡û
>SRA1014898
SRR023845.370036
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
15
-
Ser
CGA
[SRA]
>W1511509103
JXQU01000002
Actinomycetota
Curtobacterium flaccumfaciens MEB126 [JXQU]
20671
20760
+
Ser
CGA
[ENA]
¡û
>C161021896
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
163523
163612
+
Ser
CGA
[Ensembl]
¡û
>W1610588232
LDQB01000077
Actinomycetota
Curtobacterium citreum [LDQB]
13908
13819
-
Ser
CGA
[ENA]
¡û
>W1610589998
LDRB01000058
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6480
6569
+
Ser
CGA
[ENA]
¡û
>W1610590032
LDRC01000028
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
10734
10645
-
Ser
CGA
[ENA]
¡û
>W1610735266
LMMJ01000007
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
457824
457735
-
Ser
CGA
[ENA]
¡û
>W1610738208
LMOS01000007
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
15117
15028
-
Ser
CGA
[ENA]
¡û
>W1610738423
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1134775
1134686
-
Ser
CGA
[ENA]
¡û
>W1610739181
LMPO01000012
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
129745
129656
-
Ser
CGA
[ENA]
¡û
>W1710526345
FNKG01000001
Actinomycetota
Curtobacterium sp. UNCCL20 [FNKG]
805525
805614
+
Ser
CGA
[ENA]
¡û
>W1710561432
FOOD01000006
Actinomycetota
Curtobacterium sp. YR515 [FOOD]
25378
25467
+
Ser
CGA
[ENA]
¡û
>W1710707512
LDQB01000077
Actinomycetota
Curtobacterium citreum [LDQB]
13908
13819
-
Ser
CGA
[ENA]
¡û
>W1710709278
LDRB01000058
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6480
6569
+
Ser
CGA
[ENA]
¡û
>W1710709312
LDRC01000028
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
10734
10645
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK