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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30588 (25 seq.)
>W1710796521
LJSD01000017
Alphaproteobacteria
Mesorhizobium sp. 1M-11 [LJSD]
78980
78891
-
Ser
TGA
[ENA]
¡û
>W1711353697
MDET01000060
Alphaproteobacteria
Pseudaminobacter manganicus [MDET]
8388
8477
+
Ser
TGA
[ENA]
¡û
>W1711386586
MEFO01000019
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
436365
436454
+
Ser
TGA
[ENA]
¡û
>WENV180691970
OCZS010291031
[OCZS] soil metagenome; soil
130
41
-
Ser
TGA
[ENA]
¢þ
>W141093758
AVBN01000047
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
56682
56771
+
Ser
TGA
[ENA]
¡û
>W141093777
AVBO01000010
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
56682
56771
+
Ser
TGA
[ENA]
¡û
>W141093848
AVBP01000021
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
164277
164188
-
Ser
TGA
[ENA]
¡û
>W141093874
AVBQ01000017
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
56682
56771
+
Ser
TGA
[ENA]
¡û
>WENV181308339
OFIS01005697
[OFIS] sludge metagenome; sludge
538
449
-
Ser
TGA
[ENA]
¢þ
>WENV181311728
OFJB01010003
[OFJB] sludge metagenome; sludge
692
603
-
Ser
TGA
[ENA]
¢þ
>WENV181401880
OFTX01014780
[OFTX] sludge metagenome; sludge
767
856
+
Ser
TGA
[ENA]
¢þ
>W141242829
CAIU01000012
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
11987
11898
-
Ser
TGA
[ENA]
¡û
>WENV182953526
OKVY01004554
[OKVY] human gut metagenome; human gut
791
880
+
Ser
TGA
[ENA]
¢þ
>WENV170712254
LNFM01011361
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5466
5555
+
Ser
TGA
[ENA]
¢þ
>WENV170962227
MRWF01009227
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
3759
3670
-
Ser
TGA
[ENA]
¢þ
>C191064565
CP029562
Alphaproteobacteria
Mesorhizobium sp. Pch-S [CP029562]
5819616
5819527
-
Ser
TGA
-
¡û
>W141712255
JMQM01000001
Alphaproteobacteria
Nitratireductor basaltis [JMQM]
1069834
1069923
+
Ser
TGA
[ENA]
¡û
>W1910693395
MDEO01000032
Alphaproteobacteria
Mesorhizobium hungaricum UASWS1009 [MDEO]
396095
396006
-
Ser
TGA
[ENA]
¡û
>W1810177496
PJRO01000006
Alphaproteobacteria
Mesorhizobium loti LU [PJRO]
383528
383439
-
Ser
TGA
[ENA]
¡û
>W1810394308
PYBP01000001
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
234317
234228
-
Ser
TGA
[ENA]
¡û
>W1810595895
QGGG01000002
Alphaproteobacteria
Pseudaminobacter salicylatoxidans DSM 6986 [QGGG]
155259
155348
+
Ser
TGA
[ENA]
¡û
>ENV09003868
ADGO01200042
Compost metagenome contig00001
99
10
-
Ser
TGA
[ENA]
¡û
>W1511588816
LBCQ01000003
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
349775
349864
+
Ser
TGA
[ENA]
¡û
>W1610660478
LJSD01000017
Alphaproteobacteria
Mesorhizobium sp. 1M-11 [LJSD]
78980
78891
-
Ser
TGA
[ENA]
¡û
>W1710513562
FNAG01000001
Gammaproteobacteria
Aquimonas voraii [FNAG]
194628
194717
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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