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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30621 (41 seq.)
>W1710853207
LLWK01000036
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
198443
198356
-
Ser
GCT
[ENA]
¡û
>W1710892617
LNDX01000030
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
5792
5705
-
Ser
GCT
[ENA]
¡û
>W131229160
AUGO01000009
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
72080
71993
-
Ser
GCT
[ENA]
¡û
>W131237961
AUSH01000084
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
170360
170271
-
Ser
GCT
[ENA]
¡û
>W131214035
ATTM01000002
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
66982
66895
-
Ser
GCT
[ENA]
¡û
>W131225368
AUDN01000007
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
230797
230886
+
Ser
GCT
[ENA]
¡û
>W131229094
AUGN01000001
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
344952
344865
-
Ser
GCT
[ENA]
¡û
>W1711743983
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
1452230
1452143
-
Ser
GCT
[ENA]
¡û
>W1711751648
MUNX01000136
Bacteroidota
Flavobacterium sp. A45 [MUNX]
241
328
+
Ser
GCT
[ENA]
¡û
>WENV180345344
OBLM01276492
[OBLM] soil metagenome; soil
107
194
+
Ser
GCT
[ENA]
¢þ
>WENV180399238
OBQG01029716
[OBQG] marine metagenome; ENV:00002010
28
115
+
Ser
GCT
[ENA]
¢þ
>WENV180594009
OCOY01010130
[OCOY] marine metagenome; ENVO:00002010
21
108
+
Ser
GCT
[ENA]
¢þ
>W141291499
JASY01000007
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
158305
158218
-
Ser
GCT
[ENA]
¡û
>WENV183621126
OOFT01007668
[OOFT] marine metagenome; sea ice
803
890
+
Ser
GCT
[ENA]
¢þ
>WENV170639175
JFJP01001275
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
90
3
-
Ser
GCT
[ENA]
¢þ
>WENV170711206
LNFM01004018
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22445
22532
+
Ser
GCT
[ENA]
¢þ
>C191120489
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
85798
85711
-
Ser
GCT
-
¡û
>C191155233
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
3794325
3794412
+
Ser
GCT
-
¡û
>C191156064
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
2022727
2022640
-
Ser
GCT
-
¡û
>C191156067
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
2022342
2022255
-
Ser
GCT
-
¡û
>C191161896
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
2224921
2225008
+
Ser
GCT
-
¡û
>C191213006
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
53403
53316
-
Ser
GCT
-
¡û
>W1910183397
BJNR01000024
Bacteroidota
Flavobacterium aquatile NBRC 15052 [BJNR]
26571
26658
+
Ser
GCT
[ENA]
¡û
>W1910808817
MUGQ01000014
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
73865
73778
-
Ser
GCT
[ENA]
¡û
>C09106230
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
593359
593270
-
Ser
GCT
[Ensembl]
¡û
>W1910933640
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
28767
28854
+
Ser
GCT
[ENA]
¡û
>W1810089353
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2029319
2029232
-
Ser
GCT
[ENA]
¡û
>W1810265862
PQVG01000005
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
160826
160739
-
Ser
GCT
[ENA]
¡û
>W1810577030
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
59677
59590
-
Ser
GCT
[ENA]
¡û
>W1511346610
JRHH01000004
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
26870
26957
+
Ser
GCT
[ENA]
¡û
>W1511390888
JSYL01000005
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
143527
143438
-
Ser
GCT
[ENA]
¡û
>W121086520
AKJZ01000027
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
8294
8207
-
Ser
GCT
[ENA]
¡û
>W1610716331
LLWK01000036
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
198443
198356
-
Ser
GCT
[ENA]
¡û
>W1610752883
LNDX01000030
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
5792
5705
-
Ser
GCT
[ENA]
¡û
>WENV080150
AATO01009308
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
459
550
+
Ser
GCT
[ENA]
>W1710538643
FNUS01000001
Bacteroidota
Halpernia humi [FNUS]
783547
783458
-
Ser
GCT
[ENA]
¡û
>W1710555837
FOJT01000006
Bacteroidota
Flavobacterium swingsii [FOJT]
95763
95850
+
Ser
GCT
[ENA]
¡û
>W1710557450
FOLA01000007
Bacteroidota
Kaistella jeonii [FOLA]
53800
53889
+
Ser
GCT
[ENA]
¡û
>W1710564840
FOQT01000005
Bacteroidota
Halpernia frigidisoli [FOQT]
221981
221892
-
Ser
GCT
[ENA]
¡û
>W1710585072
FQWB01000005
Bacteroidota
Flavobacterium fluvii [FQWB]
189120
189033
-
Ser
GCT
[ENA]
¡û
>W1710598919
FTOI01000006
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
79529
79618
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK