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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306256 (14 seq.)
>WENV170680262
LFCJ01006951
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7012
7087
+
Glu
TTC
[ENA]
¢þ
>WENV170681372
LFFM01000630
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11118
11193
+
Glu
TTC
[ENA]
¢þ
>WENV170681888
LFFM01003893
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
9169
9094
-
Glu
TTC
[ENA]
¢þ
>WENV170682104
LFFM01006129
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6357
6282
-
Glu
TTC
[ENA]
¢þ
>C131003420
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
20534
20609
+
Glu
TTC
[Ensembl]
¡û
>C131003455
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
2079465
2079390
-
Glu
TTC
[Ensembl]
¡û
>C131003464
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
1826454
1826379
-
Glu
TTC
[Ensembl]
¡û
>C131003475
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
1825317
1825242
-
Glu
TTC
[Ensembl]
¡û
>C131003490
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
377813
377738
-
Glu
TTC
[Ensembl]
¡û
>W1710512889
FMZT01000007
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
104563
104488
-
Glu
TTC
[ENA]
¡û
>W1710512930
FMZT01000037
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
9475
9400
-
Glu
TTC
[ENA]
¡û
>W1710546216
FOCA01000039
Bacillota
Candidatus Frackibacter sp. WG12 alkaliacetigena [FOCA]
576
651
+
Glu
TTC
[ENA]
¡û
>W1710568634
FOTT01000010
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
90678
90603
-
Glu
TTC
[ENA]
¡û
>W1710568670
FOTT01000038
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
576
651
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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