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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30632 (26 seq.)
>W1710815510
LKKJ01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
59397
59486
+
Ser
TGA
[ENA]
¡û
>W1710815627
LKKL01000013
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
333936
333847
-
Ser
TGA
[ENA]
¡û
>W1711353359
MDEM01000026
Gammaproteobacteria
Stutzerimonas xanthomarina [MDEM]
153949
153860
-
Ser
TGA
[ENA]
¡û
>WENV182571307
OJFG01011537
[OJFG] seawater metagenome; Sea water
238
149
-
Ser
TGA
[ENA]
¢þ
>W141273243
CCSF01000001
Gammaproteobacteria
Pseudomonas saudiphocaensis 20_BN [CCSF]
446538
446627
+
Ser
TGA
[ENA]
¡û
>WENV170221398
CEQA01128026
[CEQA] marine metagenome genome assembly TARA_041_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
165
76
-
Ser
TGA
[ENA]
¢þ
>WENV170263221
CERC01027763
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2319
2230
-
Ser
TGA
[ENA]
¢þ
>WENV170265323
CERD01127628
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
24593
24682
+
Ser
TGA
[ENA]
¢þ
>WENV170357109
CETJ01095833
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4480
4391
-
Ser
TGA
[ENA]
¢þ
>C191044739
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
2818452
2818363
-
Ser
TGA
-
¡û
>W1810156376
PJBG01000018
Gammaproteobacteria
Pseudomonas sp. Choline-3u-10 [PJBG]
94
5
-
Ser
TGA
[ENA]
¡û
>W1810224470
POUL01000004
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
419353
419442
+
Ser
TGA
[ENA]
¡û
>W1810224998
POUU01000001
Gammaproteobacteria
Stutzerimonas stutzeri DSM 17088 [POUU]
648805
648716
-
Ser
TGA
[ENA]
¡û
>W1810225103
POUW01000001
Gammaproteobacteria
Stutzerimonas stutzeri 28a3 [POUW]
735927
735838
-
Ser
TGA
[ENA]
¡û
>W1810722110
QNTV01000014
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
90798
90887
+
Ser
TGA
[ENA]
¡û
>W1810743396
QORI01000022
Gammaproteobacteria
Pseudomonas sp. SST3 [QORI]
40060
39971
-
Ser
TGA
[ENA]
¡û
>C151023538
CP007441
Gammaproteobacteria
Stutzerimonas stutzeri 28a24 [CP007441]
1951288
1951377
+
Ser
TGA
[Ensembl]
¡û
>W1511490033
JWTL01000017
Gammaproteobacteria
Pseudomonas sp. 10B238 [JWTL]
75587
75676
+
Ser
TGA
[ENA]
¡û
>W1511527579
JYHV01000014
Gammaproteobacteria
Stutzerimonas stutzeri NT0128 [JYHV]
314437
314526
+
Ser
TGA
[ENA]
¡û
>C121015368
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
2587760
2587671
-
Ser
TGA
[Ensembl]
¡û
>C161000940
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
2326801
2326890
+
Ser
TGA
-
¡û
>C161090009
CP015641
Gammaproteobacteria
Stutzerimonas stutzeri 273 [CP015641]
4618984
4618895
-
Ser
TGA
[Ensembl]
¡û
>W121018207
AGSX01000019
Gammaproteobacteria
Stutzerimonas stutzeri SDM-LAC [AGSX]
70073
70162
+
Ser
TGA
[ENA]
¡û
>W1610679607
LKKJ01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
59397
59486
+
Ser
TGA
[ENA]
¡û
>W1610679724
LKKL01000013
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
333936
333847
-
Ser
TGA
[ENA]
¡û
>W1710586218
FQXA01000002
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
115573
115662
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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