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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306565 (93 seq.)
>W1710852998
LLWF02000027
Alphaproteobacteria
Roseomonas mucosa [LLWF]
49614
49539
-
Ala
CGC
[ENA]
¡û
>W1711116550
LUCI01000009
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
4183
4108
-
Ala
CGC
[ENA]
¡û
>W1711116623
LUCJ01000016
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
150203
150128
-
Ala
CGC
[ENA]
¡û
>W1711466196
MJMD01000054
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
249608
249683
+
Ala
CGC
[ENA]
¡û
>W1711466276
MJMF01000044
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
119197
119272
+
Ala
CGC
[ENA]
¡û
>C171032881
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
2694779
2694704
-
Ala
CGC
-
¡û
>C171032944
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2350919
2350844
-
Ala
CGC
-
¡û
>C171036146
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
2002961
2003036
+
Ala
CGC
-
¡û
>C171039530
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
374635
374710
+
Ala
CGC
-
¡û
>C171100645
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
1888855
1888780
-
Ala
CGC
-
¡û
>C171119424
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2480485
2480410
-
Ala
CGC
-
¡û
>C171120253
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
737928
738003
+
Ala
CGC
-
¡û
>C171120310
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
730823
730898
+
Ala
CGC
-
¡û
>C171126409
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
757623
757698
+
Ala
CGC
-
¡û
>WENV180311084
OBJT01110132
[OBJT] soil metagenome; soil
339
414
+
Ala
CGC
[ENA]
¢þ
>W141200345
AYXS01000010
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
10491
10416
-
Ala
CGC
[ENA]
¡û
>W141226173
BAJV01000014
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
22668
22743
+
Ala
CGC
[ENA]
¡û
>W141229568
BAND01000012
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
19345
19270
-
Ala
CGC
[ENA]
¡û
>W141247949
CBLX010000023
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
110751
110826
+
Ala
CGC
[ENA]
¡û
>W141276635
JADY01000007
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
65007
64932
-
Ala
CGC
[ENA]
¡û
>W141401969
JDTI01000003
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
55762
55837
+
Ala
CGC
[ENA]
¡û
>W141428601
JEOA01000003
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
112178
112253
+
Ala
CGC
[ENA]
¡û
>C181088280
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
1028641
1028716
+
Ala
CGC
-
¡û
>C181102030
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3367891
3367966
+
Ala
CGC
-
¡û
>C181193679
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
535936
535861
-
Ala
CGC
-
¡û
>C191023949
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
1201896
1201971
+
Ala
CGC
-
¡û
>C191150976
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2075118
2075043
-
Ala
CGC
-
¡û
>W141558730
JHWD01000018
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
25714
25639
-
Ala
CGC
[ENA]
¡û
>W1910007908
BDER01000013
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
38159
38084
-
Ala
CGC
[ENA]
¡û
>W1910008015
BDET01000019
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
27278
27203
-
Ala
CGC
[ENA]
¡û
>W1910008173
BDEW01000015
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
31667
31592
-
Ala
CGC
[ENA]
¡û
>W1910008329
BDEZ01000006
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
62514
62439
-
Ala
CGC
[ENA]
¡û
>C141012373
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
2055311
2055236
-
Ala
CGC
[Ensembl]
¡û
>W1910657459
MAPU01000017
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
4107
4182
+
Ala
CGC
[ENA]
¡û
>W1910694752
MDTO01000323
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
37126
37051
-
Ala
CGC
[ENA]
¡û
>W1910695577
MDVY01000001
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
43775
43850
+
Ala
CGC
[ENA]
¡û
>W1910695665
MDVZ01000285
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
21115
21190
+
Ala
CGC
[ENA]
¡û
>W1910929235
NIRT01000006
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
53091
53166
+
Ala
CGC
[ENA]
¡û
>W1910990428
NKTX01000004
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
88290
88215
-
Ala
CGC
[ENA]
¡û
>W1910990464
NKTY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
166784
166859
+
Ala
CGC
[ENA]
¡û
>W1910990518
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
61305
61230
-
Ala
CGC
[ENA]
¡û
>W1910990575
NKUA01000006
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
93375
93300
-
Ala
CGC
[ENA]
¡û
>W1910990709
NKUD01000002
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
29884
29809
-
Ala
CGC
[ENA]
¡û
>W1910990790
NKUE01000028
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
24456
24381
-
Ala
CGC
[ENA]
¡û
>W1911597813
PNQZ01000001
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
48284
48209
-
Ala
CGC
[ENA]
¡û
>W1911717683
QQBI01000005
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
97574
97649
+
Ala
CGC
[ENA]
¡û
>W1911768572
QXGS01000002
Alphaproteobacteria
Pseudoroseomonas vastitatis CPCC 101021 [QXGS]
477578
477653
+
Ala
CGC
[ENA]
¡û
>W1810053977
PDEU01000002
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
289876
289951
+
Ala
CGC
[ENA]
¡û
>W1810069698
PEBQ01000093
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
1929
1854
-
Ala
CGC
[ENA]
¡û
>W1810223502
POTC01000038
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
24482
24407
-
Ala
CGC
[ENA]
¡û
>W1810268413
PRCW01000112
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
4809
4884
+
Ala
CGC
[ENA]
¡û
>W1810603404
QGLF01000002
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
254815
254740
-
Ala
CGC
[ENA]
¡û
>W1810894159
QUWV01000029
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
46878
46803
-
Ala
CGC
[ENA]
¡û
>C151006039
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3389788
3389863
+
Ala
CGC
[Ensembl]
¡û
>C151006180
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
1329053
1329128
+
Ala
CGC
[Ensembl]
¡û
>ENV09000517
ABSO01011817
Freshwater sediment metagenome lwFormate_C1
276
203
-
Ala
CGC
[ENA]
¡û
>C10100694
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
500755
500680
-
Ala
CGC
[Ensembl]
¡û
>C10100865
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
500749
500674
-
Ala
CGC
[Ensembl]
¡û
>C10101036
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
500749
500674
-
Ala
CGC
[Ensembl]
¡û
>C10101093
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
500749
500674
-
Ala
CGC
[Ensembl]
¡û
>W1511271131
JOKL01000025
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
65282
65207
-
Ala
CGC
[ENA]
¡û
>W1511431866
JUFX01000089
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
68999
68924
-
Ala
CGC
[ENA]
¡û
>W11149338
AEUP01000030
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
251200
251125
-
Ala
CGC
[ENA]
¡û
>W11157652
AFCH01000032
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
115525
115600
+
Ala
CGC
[ENA]
¡û
>W11186759
CADP01000004
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
31495
31570
+
Ala
CGC
[ENA]
¡û
>W11186844
CADR01000019
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
49326
49251
-
Ala
CGC
[ENA]
¡û
>C161001095
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
3129184
3129109
-
Ala
CGC
[Ensembl]
¡û
>C161001935
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
473172
473097
-
Ala
CGC
-
¡û
>C161105567
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
2498770
2498845
+
Ala
CGC
[Ensembl]
¡û
>W121016336
AGQV01000006
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
112392
112467
+
Ala
CGC
[ENA]
¡û
>W121113842
ALOX01000023
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
13049
12974
-
Ala
CGC
[ENA]
¡û
>W121122993
BACG01000004
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
37118
37043
-
Ala
CGC
[ENA]
¡û
>W121126873
CADO01000034
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
37271
37196
-
Ala
CGC
[ENA]
¡û
>W121126924
CADQ01000100
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
322570
322645
+
Ala
CGC
[ENA]
¡û
>W1610041117
BANF01000012
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
87091
87166
+
Ala
CGC
[ENA]
¡û
>W1610041254
BANI01000035
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
31623
31548
-
Ala
CGC
[ENA]
¡û
>W1610041309
BANJ01000022
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
60498
60423
-
Ala
CGC
[ENA]
¡û
>W121071509
AJXZ01000071
Alphaproteobacteria
Nitratireductor aquibiodomus RA22 [AJXZ]
37489
37414
-
Ala
CGC
[ENA]
¡û
>WENV070535
AACY023812770
Marine microbial communities from Global Ocean Sampling (GOS)
410
485
+
Ala
CGC
[ENA]
>W1610624113
LHZD01000008
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
50911
50836
-
Ala
CGC
[ENA]
¡û
>W1610624161
LHZE01000058
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
20676
20751
+
Ala
CGC
[ENA]
¡û
>W1610624754
LHZR01000098
Alphaproteobacteria
Gluconobacter albidus [LHZR]
45451
45376
-
Ala
CGC
[ENA]
¡û
>W1610927909
LUCI01000009
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
4183
4108
-
Ala
CGC
[ENA]
¡û
>W1610927982
LUCJ01000016
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
150203
150128
-
Ala
CGC
[ENA]
¡û
>W1710038315
BANF01000012
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
87091
87166
+
Ala
CGC
[ENA]
¡û
>W1710038452
BANI01000035
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
31623
31548
-
Ala
CGC
[ENA]
¡û
>W1710038507
BANJ01000022
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
60498
60423
-
Ala
CGC
[ENA]
¡û
>W1710535307
FNSL01000001
Alphaproteobacteria
Nitratireductor aquibiodomus ES.061 [FNSL]
2332363
2332288
-
Ala
CGC
[ENA]
¡û
>W1710624707
JOPF01000001
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
45532
45457
-
Ala
CGC
[ENA]
¡û
>W1710624892
JOPJ01000028
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
9436
9361
-
Ala
CGC
[ENA]
¡û
>W1710755231
LHZD01000008
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
50911
50836
-
Ala
CGC
[ENA]
¡û
>W1710755279
LHZE01000058
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
20676
20751
+
Ala
CGC
[ENA]
¡û
>W1710755872
LHZR01000098
Alphaproteobacteria
Gluconobacter albidus [LHZR]
45451
45376
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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