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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30671 (43 seq.)
>W1710862581
LMEM01000011
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
366021
365932
-
Ser
GGA
[ENA]
¡û
>W1710866390
LMHK01000003
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
328670
328581
-
Ser
GGA
[ENA]
¡û
>W1710871869
LMLO01000002
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
173208
173297
+
Ser
GGA
[ENA]
¡û
>W1710878254
LMQU01000010
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
714086
714175
+
Ser
GGA
[ENA]
¡û
>W1710989819
LPWE01000010
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
302008
301919
-
Ser
GGA
[ENA]
¡û
>W1710989899
LPWG01000002
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
43691
43602
-
Ser
GGA
[ENA]
¡û
>W131224301
AUCR01000006
Alphaproteobacteria
Cucumibacter marinus DSM 18995 [AUCR]
157319
157230
-
Ser
GGA
[ENA]
¡û
>W1711386042
MEEV01000041
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
11513
11424
-
Ser
GGA
[ENA]
¡û
>W1711504944
MKVA01000011
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
430519
430608
+
Ser
GGA
[ENA]
¡û
>WENV180019470
FTCA01000048
[FTCA] metagenome; soil
97
8
-
Ser
GGA
[ENA]
¢þ
>WENV180020523
FTCZ01005340
[FTCZ] metagenome; soil
1023
934
-
Ser
GGA
[ENA]
¢þ
>WENV181192780
OEPS011029210
[OEPS] soil metagenome; soil
146
57
-
Ser
GGA
[ENA]
¢þ
>W141260961
CCAO010000037
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
36294
36383
+
Ser
GGA
[ENA]
¡û
>WENV183696673
OULM01000001
[OULM] metagenome; soil
635
724
+
Ser
GGA
[ENA]
¢þ
>WENV183729205
PJTQ01011038
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1222
1311
+
Ser
GGA
[ENA]
¢þ
>WENV183741244
PJUF01064797
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
261
172
-
Ser
GGA
[ENA]
¢þ
>WENV183741734
PJUG01004429
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
148
237
+
Ser
GGA
[ENA]
¢þ
>WENV170136312
CENV01022086
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
150686
150597
-
Ser
GGA
[ENA]
¢þ
>WENV170136523
CENV01044985
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5009
5098
+
Ser
GGA
[ENA]
¢þ
>W141461699
JFGS01000001
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
364320
364409
+
Ser
GGA
[ENA]
¡û
>C181170888
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
1524074
1523985
-
Ser
GGA
-
¡û
>W141523458
JGYG01000001
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
280004
279915
-
Ser
GGA
[ENA]
¡û
>C191090907
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
388180
388269
+
Ser
GGA
-
¡û
>C191130690
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
161200
161111
-
Ser
GGA
-
¡û
>W141814305
JQGB01000014
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
13589
13678
+
Ser
GGA
[ENA]
¡û
>W141814343
JQGC01000003
Alphaproteobacteria
Devosia riboflavina [JQGC]
167363
167452
+
Ser
GGA
[ENA]
¡û
>W1911696591
QMEL01000002
Alphaproteobacteria
Pelagibacterium sediminicola IMCC34151 [QMEL]
486220
486309
+
Ser
GGA
[ENA]
¡û
>W1810486986
QAYG01000001
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
679728
679817
+
Ser
GGA
[ENA]
¡û
>W1810606078
QGNX01000006
Alphaproteobacteria
Oceanibium sediminis O448 [QGNX]
5237
5148
-
Ser
GGA
[ENA]
¡û
>W1810685921
QKZQ01000012
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
17874
17963
+
Ser
GGA
[ENA]
¡û
>W1810779216
QQNH01000003
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
30892
30803
-
Ser
GGA
[ENA]
¡û
>C151002845
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
499612
499701
+
Ser
GGA
[Ensembl]
¡û
>C151079176
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
4304055
4303966
-
Ser
GGA
[Ensembl]
¡û
>W1511541958
JZEX01000185
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
61152
61063
-
Ser
GGA
[ENA]
¡û
>W1511541991
JZEY01000061
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1082083
1082172
+
Ser
GGA
[ENA]
¡û
>W1610724927
LMEM01000011
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
366021
365932
-
Ser
GGA
[ENA]
¡û
>W1610728736
LMHK01000003
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
328670
328581
-
Ser
GGA
[ENA]
¡û
>W1610734215
LMLO01000002
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
173208
173297
+
Ser
GGA
[ENA]
¡û
>W1610740600
LMQU01000010
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
714086
714175
+
Ser
GGA
[ENA]
¡û
>W1710530062
FNOM01000001
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
694059
694148
+
Ser
GGA
[ENA]
¡û
>W1710533667
FNRH01000004
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
29957
29868
-
Ser
GGA
[ENA]
¡û
>W1710579511
FPCK01000004
Alphaproteobacteria
Devosia crocina [FPCK]
402595
402506
-
Ser
GGA
[ENA]
¡û
>W1710582177
FPKU01000002
Alphaproteobacteria
Devosia enhydra [FPKU]
108054
108143
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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