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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306746 (88 seq.)
>W131179929
ARMT01000054
Bacillota
Paenibacillus fonticola DSM 21315 [ARMT]
84214
84289
+
Arg
TCT
[ENA]
¡û
>W131179930
ARMT01000055
Bacillota
Paenibacillus fonticola DSM 21315 [ARMT]
526
451
-
Arg
TCT
[ENA]
¡û
>W1711184712
LWMH01000001
Bacillota
Paenibacillus glucanolyticus [LWMH]
3305096
3305171
+
Arg
TCT
[ENA]
¡û
>W1711184729
LWMH01000001
Bacillota
Paenibacillus glucanolyticus [LWMH]
3310440
3310365
-
Arg
TCT
[ENA]
¡û
>W131251957
CBLK010000072
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
7294
7369
+
Arg
TCT
[ENA]
¡û
>W131251958
CBLK010000072
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
11056
10981
-
Arg
TCT
[ENA]
¡û
>W1711677011
MRTF01000004
Bacillota
Paenibacillus lautus [MRTF]
535191
535266
+
Arg
TCT
[ENA]
¡û
>W1711677012
MRTF01000004
Bacillota
Paenibacillus lautus [MRTF]
541647
541572
-
Arg
TCT
[ENA]
¡û
>W1711677814
MRTT01000020
Bacillota
Paenibacillus glucanolyticus [MRTT]
58636
58711
+
Arg
TCT
[ENA]
¡û
>W1711677815
MRTT01000020
Bacillota
Paenibacillus glucanolyticus [MRTT]
63979
63904
-
Arg
TCT
[ENA]
¡û
>W1711679798
MRVI01000002
Bacillota
Paenibacillus ihbetae IHBB 9951 [MRVI]
165591
165666
+
Arg
TCT
[ENA]
¡û
>W1711679811
MRVI01000002
Bacillota
Paenibacillus ihbetae IHBB 9951 [MRVI]
173134
173059
-
Arg
TCT
[ENA]
¡û
>W1711710758
MSZX01000002
Bacillota
Paenibacillus selenitireducens [MSZX]
416795
416719
-
Arg
TCT
[ENA]
¡û
>C171030313
CP014167
Bacillota
Paenibacillus yonginensis DCY84 [CP014167]
3023764
3023839
+
Arg
TCT
-
¡û
>C171030359
CP014167
Bacillota
Paenibacillus yonginensis DCY84 [CP014167]
3051631
3051555
-
Arg
TCT
-
¡û
>W141072382
ASPT01000028
Bacillota
Paenibacillus sp. FSL R5-808 [ASPT]
109586
109661
+
Arg
TCT
[ENA]
¡û
>W141072383
ASPT01000028
Bacillota
Paenibacillus sp. FSL R5-808 [ASPT]
114929
114854
-
Arg
TCT
[ENA]
¡û
>W141072612
ASPW01000014
Bacillota
Paenibacillus sp. FSL H8-457 [ASPW]
459310
459385
+
Arg
TCT
[ENA]
¡û
>W141072613
ASPW01000015
Bacillota
Paenibacillus sp. FSL H8-457 [ASPW]
9535
9460
-
Arg
TCT
[ENA]
¡û
>W08010719
ABRG01000021
Bacillota
Paenibacillus sp. Y412MC10 Y412MC10 [ABRG]
638
563
-
Arg
TCT
[ENA]
¡û
>W141231749
BAUO01000014
Bacillota
Paenibacillus sp. JCM 10914 [BAUO]
55659
55734
+
Arg
TCT
[ENA]
¡û
>W141231750
BAUO01000014
Bacillota
Paenibacillus sp. JCM 10914 [BAUO]
62552
62477
-
Arg
TCT
[ENA]
¡û
>W141277426
JAEO01000073
Bacillota
Bacillus sp. J13 [JAEO]
28443
28518
+
Arg
TCT
[ENA]
¡û
>W141277431
JAEO01000091
Bacillota
Bacillus sp. J13 [JAEO]
4943
4868
-
Arg
TCT
[ENA]
¡û
>WENV170001572
AGFS01092692
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
139
214
+
Arg
TCT
[ENA]
¢þ
>WENV170708359
LNAP01072888
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
169
94
-
Arg
TCT
[ENA]
¢þ
>C181021461
CP016809
Bacillota
Paenibacillus ihbetae IHBB 9852 [CP016809]
1631073
1631148
+
Arg
TCT
-
¡û
>C181021518
CP016809
Bacillota
Paenibacillus ihbetae IHBB 9852 [CP016809]
1638482
1638407
-
Arg
TCT
-
¡û
>C191089241
CP032412
Bacillota
Paenibacillus lautus E7593-69 [CP032412]
4833201
4833276
+
Arg
TCT
-
¡û
>C191089256
CP032412
Bacillota
Paenibacillus lautus E7593-69 [CP032412]
4841956
4841881
-
Arg
TCT
-
¡û
>C191122438
CP034248
Bacillota
Paenibacillus lentus DSM 25539 [CP034248]
2217252
2217327
+
Arg
TCT
-
¡û
>C191122465
CP034248
Bacillota
Paenibacillus lentus DSM 25539 [CP034248]
2236748
2236673
-
Arg
TCT
-
¡û
>C191177141
CP040396
Bacillota
Paenibacillus algicola HB172198 [CP040396]
1364009
1364084
+
Arg
TCT
-
¡û
>C191177208
CP040396
Bacillota
Paenibacillus algicola HB172198 [CP040396]
1368604
1368529
-
Arg
TCT
-
¡û
>W1910154884
BIMC01000018
Bacillota
Paenibacillus glucanolyticus NBRC 15330 [BIMC]
57039
57114
+
Arg
TCT
[ENA]
¡û
>W1910154885
BIMC01000018
Bacillota
Paenibacillus glucanolyticus NBRC 15330 [BIMC]
62382
62307
-
Arg
TCT
[ENA]
¡û
>W1910154963
BIMF01000001
Bacillota
Paenibacillus lautus NBRC 15380 [BIMF]
55785
55860
+
Arg
TCT
[ENA]
¡û
>W1910154964
BIMF01000001
Bacillota
Paenibacillus lautus NBRC 15380 [BIMF]
64236
64161
-
Arg
TCT
[ENA]
¡û
>W1910340306
FTLT01000020
Bacillota
Paenibacillus bouchesdurhonensis Marseille-P3071 [FTLT]
211736
211811
+
Arg
TCT
[ENA]
¡û
>W1910340307
FTLT01000020
Bacillota
Paenibacillus bouchesdurhonensis Marseille-P3071 [FTLT]
225316
225241
-
Arg
TCT
[ENA]
¡û
>W1910692563
MDDO01000022
Bacillota
Paenibacillus aceti L14 [MDDO]
141414
141489
+
Arg
TCT
[ENA]
¡û
>W1910692576
MDDO01000024
Bacillota
Paenibacillus aceti L14 [MDDO]
876
801
-
Arg
TCT
[ENA]
¡û
>W1910755846
MKZM01000010
Bacillota
Paenibacillus sp. GM2FR GM2FR [MKZM]
702028
702103
+
Arg
TCT
[ENA]
¡û
>W1910755847
MKZM01000010
Bacillota
Paenibacillus sp. GM2FR GM2FR [MKZM]
710584
710509
-
Arg
TCT
[ENA]
¡û
>W1911424006
NXFP01000004
Bacillota
Paenibacillus lautus BHU3 [NXFP]
677882
677957
+
Arg
TCT
[ENA]
¡û
>W1911424007
NXFP01000004
Bacillota
Paenibacillus lautus BHU3 [NXFP]
687841
687766
-
Arg
TCT
[ENA]
¡û
>W1911533301
OKQQ01000008
Bacillota
Paenibacillus faecalis Marseille-P3787 [OKQQ]
738134
738208
+
Arg
TCT
[ENA]
¡û
>W1911533302
OKQQ01000008
Bacillota
Paenibacillus faecalis Marseille-P3787 [OKQQ]
743978
743904
-
Arg
TCT
[ENA]
¡û
>W1810057082
PDHM01000010
Bacillota
Paenibacillus sp. EZ-K15 [PDHM]
166009
166084
+
Arg
TCT
[ENA]
¡û
>W1810057083
PDHM01000010
Bacillota
Paenibacillus sp. EZ-K15 [PDHM]
172526
172451
-
Arg
TCT
[ENA]
¡û
>W1510081427
CDSE01000030
Bacillota
Paenibacillus dakarensis FF9 [CDSE]
4390
4315
-
Arg
TCT
[ENA]
¡û
>C10107238
CP001793
Bacillota
Paenibacillus sp. Y412MC10 [CP001793]
1769735
1769810
+
Arg
TCT
[Ensembl]
¡û
>C10107297
CP001793
Bacillota
Paenibacillus sp. Y412MC10 [CP001793]
1779513
1779438
-
Arg
TCT
[Ensembl]
¡û
>WENV11101644
AGFS01092692
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
139
214
+
Arg
TCT
[ENA]
¡û
>W11117673
ADHJ01000014
Bacillota
Paenibacillus vortex V453 [ADHJ]
380120
380195
+
Arg
TCT
[ENA]
¡û
>W11117674
ADHJ01000014
Bacillota
Paenibacillus vortex V453 [ADHJ]
385470
385395
-
Arg
TCT
[ENA]
¡û
>W1511586927
LAZU01000021
Bacillota
Paenibacillus sp. DMB20 [LAZU]
558189
558264
+
Arg
TCT
[ENA]
¡û
>W1511586973
LAZU01000039
Bacillota
Paenibacillus sp. DMB20 [LAZU]
84
159
+
Arg
TCT
[ENA]
¡û
>W1511586974
LAZU01000039
Bacillota
Paenibacillus sp. DMB20 [LAZU]
5647
5572
-
Arg
TCT
[ENA]
¡û
>W1511586976
LAZU01000049
Bacillota
Paenibacillus sp. DMB20 [LAZU]
41756
41831
+
Arg
TCT
[ENA]
¡û
>W1511586977
LAZU01000049
Bacillota
Paenibacillus sp. DMB20 [LAZU]
47299
47224
-
Arg
TCT
[ENA]
¡û
>W11152062
AEXS01000029
Bacillota
Paenibacillus sp. HGF5 [AEXS]
10311
10386
+
Arg
TCT
[ENA]
¡û
>W11152081
AEXS01000067
Bacillota
Paenibacillus sp. HGF5 [AEXS]
8909
8834
-
Arg
TCT
[ENA]
¡û
>W11180972
AGIP01000008
Bacillota
Paenibacillus lactis 154 [AGIP]
56925
57000
+
Arg
TCT
[ENA]
¡û
>W11180973
AGIP01000008
Bacillota
Paenibacillus lactis 154 [AGIP]
62383
62308
-
Arg
TCT
[ENA]
¡û
>C161085735
CP015286
Bacillota
Paenibacillus glucanolyticus 5162 [CP015286]
3594987
3595062
+
Arg
TCT
-
¡û
>C161085751
CP015286
Bacillota
Paenibacillus glucanolyticus 5162 [CP015286]
3600330
3600255
-
Arg
TCT
-
¡û
>W1610043306
BAZR01000014
Bacillota
Paenibacillus sp. JCM 10914 [BAZR]
55659
55734
+
Arg
TCT
[ENA]
¡û
>W1610043307
BAZR01000014
Bacillota
Paenibacillus sp. JCM 10914 [BAZR]
62552
62477
-
Arg
TCT
[ENA]
¡û
>W1610097838
CYXK01000012
Bacillota
Paenibacillus ihumii AT5 [CYXK]
66304
66379
+
Arg
TCT
[ENA]
¡û
>W1610097855
CYXK01000012
Bacillota
Paenibacillus ihumii AT5 [CYXK]
84342
84267
-
Arg
TCT
[ENA]
¡û
>W1610163978
FAUP01000012
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
349574
349649
+
Arg
TCT
[ENA]
¡û
>W1610163979
FAUP01000012
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
372940
372865
-
Arg
TCT
[ENA]
¡û
>W1610990449
LWMH01000001
Bacillota
Paenibacillus glucanolyticus [LWMH]
3305096
3305171
+
Arg
TCT
[ENA]
¡û
>W1610990466
LWMH01000001
Bacillota
Paenibacillus glucanolyticus [LWMH]
3310440
3310365
-
Arg
TCT
[ENA]
¡û
>W1710040466
BAZR01000014
Bacillota
Paenibacillus sp. JCM 10914 [BAZR]
55659
55734
+
Arg
TCT
[ENA]
¡û
>W1710040467
BAZR01000014
Bacillota
Paenibacillus sp. JCM 10914 [BAZR]
62552
62477
-
Arg
TCT
[ENA]
¡û
>W1710080205
BDDQ01000059
Bacillota
Caenibacillus caldisaponilyticus [BDDQ]
29034
28958
-
Arg
TCT
[ENA]
¡û
>W1710100593
CYXK01000012
Bacillota
Paenibacillus ihumii AT5 [CYXK]
66304
66379
+
Arg
TCT
[ENA]
¡û
>W1710100610
CYXK01000012
Bacillota
Paenibacillus ihumii AT5 [CYXK]
84342
84267
-
Arg
TCT
[ENA]
¡û
>W1710165645
FAUP01000012
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
349574
349649
+
Arg
TCT
[ENA]
¡û
>W1710165646
FAUP01000012
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
372940
372865
-
Arg
TCT
[ENA]
¡û
>W1710542979
FNZO01000005
Bacillota
Paenibacillus sp. cl141a [FNZO]
57005
57080
+
Arg
TCT
[ENA]
¡û
>W1710542980
FNZO01000005
Bacillota
Paenibacillus sp. cl141a [FNZO]
63866
63791
-
Arg
TCT
[ENA]
¡û
>W1710617179
JFOM01000054
Bacillota
Paenibacillus sp. LC231 [JFOM]
56139
56214
+
Arg
TCT
[ENA]
¡û
>W1710617180
JFOM01000054
Bacillota
Paenibacillus sp. LC231 [JFOM]
65235
65160
-
Arg
TCT
[ENA]
¡û
>W1710770282
LITP01000001
Bacillota
Bacillus sp. FJAT-18019 [LITP]
803991
804066
+
Arg
TCT
[ENA]
¡û
>W1710770346
LITP01000001
Bacillota
Bacillus sp. FJAT-18019 [LITP]
812099
812024
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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