This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306827 (85 seq.)
>W1710909678
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
1016678
1016753
+
Lys
TTT
[ENA]
¡û
>W1711228274
LXWK01000015
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
786635
786560
-
Lys
TTT
[ENA]
¡û
>W1711228275
LXWK01000015
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
786539
786464
-
Lys
TTT
[ENA]
¡û
>W1711270543
LZEJ01000010
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
71102
71177
+
Lys
TTT
[ENA]
¡û
>W1711270544
LZEJ01000010
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
71205
71280
+
Lys
TTT
[ENA]
¡û
>W1711270545
LZEJ01000010
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
71299
71374
+
Lys
TTT
[ENA]
¡û
>W1711270546
LZEJ01000010
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
71395
71470
+
Lys
TTT
[ENA]
¡û
>WENV181414085
OGCL01000004
[OGCL] hot springs metagenome; Hot spring water
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV181414153
OGCL01000055
[OGCL] hot springs metagenome; Hot spring water
71426
71501
+
Lys
TTT
[ENA]
¢þ
>WENV181414154
OGCL01000055
[OGCL] hot springs metagenome; Hot spring water
71527
71602
+
Lys
TTT
[ENA]
¢þ
>WENV181414155
OGCL01000055
[OGCL] hot springs metagenome; Hot spring water
71628
71703
+
Lys
TTT
[ENA]
¢þ
>WENV181414156
OGCL01000055
[OGCL] hot springs metagenome; Hot spring water
71729
71804
+
Lys
TTT
[ENA]
¢þ
>WENV181414500
OGCL01000506
[OGCL] hot springs metagenome; Hot spring water
39921
39996
+
Lys
TTT
[ENA]
¢þ
>WENV170366837
CETO01130641
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
514
439
-
Lys
TTT
[ENA]
¢þ
>WENV170965129
MTET01003053
[MTET] soil metagenome; garden soil control
45104
45179
+
Lys
TTT
[ENA]
¢þ
>WENV170966206
MTEX01004266
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
1794
1719
-
Lys
TTT
[ENA]
¢þ
>WENV170966404
MTEX01008944
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
84
9
-
Lys
TTT
[ENA]
¢þ
>C193002179
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2984111
2984036
-
Lys
TTT
-
¡û
>C191129101
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2984009
2983934
-
Lys
TTT
-
¡û
>C191129102
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2983916
2983841
-
Lys
TTT
-
¡û
>C191129103
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2983819
2983744
-
Lys
TTT
-
¡û
>W141779417
JONU01000011
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
219162
219237
+
Lys
TTT
[ENA]
¡û
>W141779418
JONU01000012
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
1
76
+
Lys
TTT
[ENA]
¡û
>W1911597915
PNRD01000003
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
649220
649145
-
Lys
TTT
[ENA]
¡û
>W1911597916
PNRD01000003
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
649117
649042
-
Lys
TTT
[ENA]
¡û
>W1911597917
PNRD01000003
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
649023
648948
-
Lys
TTT
[ENA]
¡û
>W1911597918
PNRD01000003
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
648925
648850
-
Lys
TTT
[ENA]
¡û
>W1810249119
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
88390
88315
-
Lys
TTT
[ENA]
¡û
>W1810249121
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
88189
88114
-
Lys
TTT
[ENA]
¡û
>W1810249122
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
88045
87970
-
Lys
TTT
[ENA]
¡û
>W1810249123
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
87899
87824
-
Lys
TTT
[ENA]
¡û
>W1810249632
PQCE01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
67652
67577
-
Lys
TTT
[ENA]
¡û
>W1810249634
PQCE01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
67451
67376
-
Lys
TTT
[ENA]
¡û
>W1810249635
PQCE01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
67307
67232
-
Lys
TTT
[ENA]
¡û
>W1810249636
PQCE01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
67161
67086
-
Lys
TTT
[ENA]
¡û
>W1511573474
LAMX01000012
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
194017
193942
-
Lys
TTT
[ENA]
¡û
>W1511584720
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
83199
83274
+
Lys
TTT
[ENA]
¡û
>W1511584721
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
83301
83376
+
Lys
TTT
[ENA]
¡û
>W1511584722
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
83393
83468
+
Lys
TTT
[ENA]
¡û
>W1511584723
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
83490
83565
+
Lys
TTT
[ENA]
¡û
>W11162868
AFHI01000015
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
93515
93440
-
Lys
TTT
[ENA]
¡û
>W11162869
AFHI01000015
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
93423
93348
-
Lys
TTT
[ENA]
¡û
>W11162870
AFHI01000015
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
93326
93251
-
Lys
TTT
[ENA]
¡û
>W11162880
AFHI01000021
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
132
57
-
Lys
TTT
[ENA]
¡û
>C161058555
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
165284
165209
-
Lys
TTT
-
¡û
>C161058556
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
165185
165110
-
Lys
TTT
-
¡û
>C161058557
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
165092
165017
-
Lys
TTT
-
¡û
>C161058558
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
164996
164921
-
Lys
TTT
-
¡û
>W121040582
AHTH01000050
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
218
293
+
Lys
TTT
[ENA]
¡û
>W121040583
AHTH01000050
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
321
396
+
Lys
TTT
[ENA]
¡û
>W121040584
AHTH01000050
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
415
490
+
Lys
TTT
[ENA]
¡û
>W121040585
AHTH01000050
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
511
586
+
Lys
TTT
[ENA]
¡û
>W121087033
AKKU01000011
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
116595
116520
-
Lys
TTT
[ENA]
¡û
>W121087034
AKKU01000011
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
116491
116416
-
Lys
TTT
[ENA]
¡û
>W121087035
AKKU01000011
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
116397
116322
-
Lys
TTT
[ENA]
¡û
>W121087036
AKKU01000011
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
116301
116226
-
Lys
TTT
[ENA]
¡û
>W121104123
ALAB01000011
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
109130
109205
+
Lys
TTT
[ENA]
¡û
>W121104124
ALAB01000011
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
109233
109308
+
Lys
TTT
[ENA]
¡û
>W121104125
ALAB01000011
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
109327
109402
+
Lys
TTT
[ENA]
¡û
>W121104126
ALAB01000011
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
109423
109498
+
Lys
TTT
[ENA]
¡û
>W121124694
BAFK01000012
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
9713
9638
-
Lys
TTT
[ENA]
¡û
>W121124695
BAFK01000012
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
9615
9540
-
Lys
TTT
[ENA]
¡û
>W1610585447
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40165
40240
+
Lys
TTT
[ENA]
¡û
>W1610585448
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40269
40344
+
Lys
TTT
[ENA]
¡û
>W1610585449
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40363
40438
+
Lys
TTT
[ENA]
¡û
>W1610585450
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40457
40532
+
Lys
TTT
[ENA]
¡û
>W1610585451
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40551
40626
+
Lys
TTT
[ENA]
¡û
>W1610585454
LCWL01000087
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
28
103
+
Lys
TTT
[ENA]
¡û
>W1610585455
LCWL01000087
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
122
197
+
Lys
TTT
[ENA]
¡û
>W1610585456
LCWL01000087
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
216
291
+
Lys
TTT
[ENA]
¡û
>W1610768037
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
1016678
1016753
+
Lys
TTT
[ENA]
¡û
>W1611012191
LXWK01000015
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
786635
786560
-
Lys
TTT
[ENA]
¡û
>W1611012192
LXWK01000015
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
786539
786464
-
Lys
TTT
[ENA]
¡û
>W1630013961
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
1016481
1016556
+
Lys
TTT
[ENA]
¡û
>W1630020087
LXWK01000015
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
786728
786653
-
Lys
TTT
[ENA]
¡û
>W1730016601
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
1016481
1016556
+
Lys
TTT
[ENA]
¡û
>W1730023655
LXWK01000015
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
786728
786653
-
Lys
TTT
[ENA]
¡û
>W1710704638
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40165
40240
+
Lys
TTT
[ENA]
¡û
>W1710704639
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40269
40344
+
Lys
TTT
[ENA]
¡û
>W1710704640
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40363
40438
+
Lys
TTT
[ENA]
¡û
>W1710704641
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40457
40532
+
Lys
TTT
[ENA]
¡û
>W1710704642
LCWL01000048
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
40551
40626
+
Lys
TTT
[ENA]
¡û
>W1710704645
LCWL01000087
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
28
103
+
Lys
TTT
[ENA]
¡û
>W1710704646
LCWL01000087
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
122
197
+
Lys
TTT
[ENA]
¡û
>W1710704647
LCWL01000087
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
216
291
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK