This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30689 (45 seq.)
>W1710797288
LJSX01000039
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
3535
3446
-
Ser
CGA
[ENA]
¡û
>W1711228839
LXWX01000035
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
50001
49912
-
Ser
CGA
[ENA]
¡û
>W131222235
AUBC01000007
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
114670
114759
+
Ser
CGA
[ENA]
¡û
>WENV180331531
OBLA01112752
[OBLA] soil metagenome; Alaskan Permafrost
73
162
+
Ser
CGA
[ENA]
¢þ
>WENV181145385
OEHO01287650
[OEHO] metagenome; unknown
167
78
-
Ser
CGA
[ENA]
¢þ
>WENV181167562
OEIU01043714
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1378
1289
-
Ser
CGA
[ENA]
¢þ
>WENV181234116
OFET01004660
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1278
1367
+
Ser
CGA
[ENA]
¢þ
>WENV181234562
OFEU01000389
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
3503
3414
-
Ser
CGA
[ENA]
¢þ
>WENV181416878
OGCL01172297
[OGCL] hot springs metagenome; Hot spring water
439
528
+
Ser
CGA
[ENA]
¢þ
>C08000317
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
4663988
4664077
+
Ser
CGA
[Ensembl]
¡û
>WENV170612792
FUWD012690079
[FUWD] metagenome; unknown
78
167
+
Ser
CGA
[ENA]
¢þ
>WENV170675324
LCWZ01039813
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
84
173
+
Ser
CGA
[ENA]
¢þ
>C181089616
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
623132
623221
+
Ser
CGA
-
¡û
>C191090910
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
726381
726470
+
Ser
CGA
-
¡û
>C191170880
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
2532406
2532317
-
Ser
CGA
-
¡û
>W141730053
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
2158892
2158981
+
Ser
CGA
[ENA]
¡û
>W1911148447
NPEW01000027
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
2688
2599
-
Ser
CGA
[ENA]
¡û
>W1911411012
NWUC01000006
Alphaproteobacteria
Pararhizobium haloflavum XC0140 [NWUC]
177
88
-
Ser
CGA
[ENA]
¡û
>W1810192928
PKMZ01000021
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
3
92
+
Ser
CGA
[ENA]
¡û
>SRA1015822
SRR023846.212004
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
253
164
-
Ser
CGA
[SRA]
>SRA1016286
SRR023846.436351
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
253
164
-
Ser
CGA
[SRA]
>C151072560
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
72780
72691
-
Ser
CGA
[Ensembl]
¡û
>SRA1049406
SRR035095.72269
454 Sequencing (SRP001816)
88
177
+
Ser
CGA
[SRA]
>W10118846
ADVE01000081
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
16078
15989
-
Ser
CGA
[ENA]
¡û
>W1511344053
JRFJ01000001
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
298549
298638
+
Ser
CGA
[ENA]
¡û
>W11125018
ADVE01000081
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
16078
15989
-
Ser
CGA
[ENA]
¡û
>W1610056460
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
124300
124389
+
Ser
CGA
[ENA]
¡û
>W1610056603
BBWK01000006
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
87178
87089
-
Ser
CGA
[ENA]
¡û
>W1610056741
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
5635
5546
-
Ser
CGA
[ENA]
¡û
>W1610057026
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
131980
132069
+
Ser
CGA
[ENA]
¡û
>W1610516177
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
746121
746210
+
Ser
CGA
[ENA]
¡û
>W1610588121
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
61999
61910
-
Ser
CGA
[ENA]
¡û
>W1610588189
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
69104
69193
+
Ser
CGA
[ENA]
¡û
>W1610661245
LJSX01000039
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
3535
3446
-
Ser
CGA
[ENA]
¡û
>W1611012756
LXWX01000035
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
50001
49912
-
Ser
CGA
[ENA]
¡û
>W1710053159
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
124300
124389
+
Ser
CGA
[ENA]
¡û
>W1710053302
BBWK01000006
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
87178
87089
-
Ser
CGA
[ENA]
¡û
>W1710053440
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
5635
5546
-
Ser
CGA
[ENA]
¡û
>W1710053725
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
131980
132069
+
Ser
CGA
[ENA]
¡û
>W1710501468
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
746121
746210
+
Ser
CGA
[ENA]
¡û
>W1710524462
FNIT01000001
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
129877
129788
-
Ser
CGA
[ENA]
¡û
>W1710535134
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
4892054
4892143
+
Ser
CGA
[ENA]
¡û
>W1710606300
FWXR01000025
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
57671
57760
+
Ser
CGA
[ENA]
¡û
>W1710707401
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
61999
61910
-
Ser
CGA
[ENA]
¡û
>W1710707469
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
69104
69193
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK