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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306950 (55 seq.)
>W1710821463
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
838
763
-
Gly
GCC
[ENA]
¡û
>W1710821464
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
671
596
-
Gly
GCC
[ENA]
¡û
>W1710821465
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
503
428
-
Gly
GCC
[ENA]
¡û
>W1710821466
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
404
329
-
Gly
GCC
[ENA]
¡û
>W1711273466
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
290858
290933
+
Gly
GCC
[ENA]
¡û
>W1711273467
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291025
291100
+
Gly
GCC
[ENA]
¡û
>W1711273468
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291193
291268
+
Gly
GCC
[ENA]
¡û
>W1711273469
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291292
291367
+
Undet
GSC
[ENA]
¡û
>W1711624563
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39659
39584
-
Gly
GCC
[ENA]
¡û
>W1711624564
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39561
39486
-
Gly
GCC
[ENA]
¡û
>W1711624565
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39394
39319
-
Gly
GCC
[ENA]
¡û
>W1711624566
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39288
39213
-
Gly
GCC
[ENA]
¡û
>C022003
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3963516
3963441
-
Gly
GCC
[Ensembl]
¡û
>C022004
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3963347
3963272
-
Gly
GCC
[Ensembl]
¡û
>C022005
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3963168
3963093
-
Gly
GCC
[Ensembl]
¡û
>WENV170023827
BCQL01005228
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2901
2826
-
Gly
GCC
[ENA]
¢þ
>WENV170024243
BCQL01032178
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
245
170
-
Gly
GCC
[ENA]
¢þ
>WENV170024244
BCQL01032178
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
78
3
-
Gly
GCC
[ENA]
¢þ
>C191173193
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2925503
2925578
+
Gly
GCC
-
¡û
>C191173194
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2925601
2925676
+
Gly
GCC
-
¡û
>C191173195
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2925700
2925775
+
Gly
GCC
-
¡û
>C191185871
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3958317
3958242
-
Gly
GCC
-
¡û
>C191185872
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3958147
3958072
-
Gly
GCC
-
¡û
>C191185873
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3958049
3957974
-
Gly
GCC
-
¡û
>W1911710089
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256561
256636
+
Gly
GCC
[ENA]
¡û
>W1911710090
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256728
256803
+
Gly
GCC
[ENA]
¡û
>W1911710091
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256896
256971
+
Gly
GCC
[ENA]
¡û
>W1911710092
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256995
257070
+
Gly
GCC
[ENA]
¡û
>W1810155917
PJAZ01000051
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
49375
49300
-
Gly
GCC
[ENA]
¡û
>W1810155936
PJAZ01000056
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
118884
118809
-
Gly
GCC
[ENA]
¡û
>W1810155957
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61843
61768
-
Gly
GCC
[ENA]
¡û
>W1810155958
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61637
61562
-
Gly
GCC
[ENA]
¡û
>W1810155959
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61432
61357
-
Gly
GCC
[ENA]
¡û
>W1810155960
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61223
61148
-
Gly
GCC
[ENA]
¡û
>W1810155961
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61014
60939
-
Gly
GCC
[ENA]
¡û
>W1810155962
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
60843
60768
-
Gly
GCC
[ENA]
¡û
>W1810156251
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1339736
1339811
+
Gly
GCC
[ENA]
¡û
>W1810156264
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3017138
3017063
-
Gly
GCC
[ENA]
¡û
>W1810156265
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016932
3016857
-
Gly
GCC
[ENA]
¡û
>W1810156266
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016727
3016652
-
Gly
GCC
[ENA]
¡û
>W1810156267
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016518
3016443
-
Gly
GCC
[ENA]
¡û
>W1810156268
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016309
3016234
-
Gly
GCC
[ENA]
¡û
>W1810156269
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016138
3016063
-
Gly
GCC
[ENA]
¡û
>W1810156282
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1637267
1637192
-
Gly
GCC
[ENA]
¡û
>W1810157733
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
598093
598168
+
Gly
GCC
[ENA]
¡û
>W1810157734
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
598205
598280
+
Gly
GCC
[ENA]
¡û
>W1810157735
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
598303
598378
+
Gly
GCC
[ENA]
¡û
>W1810157853
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3969435
3969510
+
Gly
GCC
[ENA]
¡û
>W1810157854
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3969689
3969764
+
Gly
GCC
[ENA]
¡û
>W1810157855
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3969801
3969876
+
Gly
GCC
[ENA]
¡û
>W1610685425
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
838
763
-
Gly
GCC
[ENA]
¡û
>W1610685426
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
671
596
-
Gly
GCC
[ENA]
¡û
>W1610685427
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
503
428
-
Gly
GCC
[ENA]
¡û
>W1610685428
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
404
329
-
Gly
GCC
[ENA]
¡û
>W1611032818
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291292
291367
+
Undet
GSC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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