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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307045 (54 seq.)
>W1710862320
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1584360
1584287
-
Ala
CGC
[ENA]
¡û
>W1710865446
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1584218
1584145
-
Ala
CGC
[ENA]
¡û
>W1711018559
LQXA01000028
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
86017
86092
+
Ala
CGC
[ENA]
¡û
>W1711061117
LRYC01000049
Actinomycetota
Microbacterium hominis [LRYC]
46850
46775
-
Ala
CGC
[ENA]
¡û
>W1711357231
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
2732245
2732170
-
Ala
CGC
[ENA]
¡û
>W1711357274
MDHD01000277
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
11911
11836
-
Ala
CGC
[ENA]
¡û
>W1711357325
MDHE01000393
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
4507
4582
+
Ala
CGC
[ENA]
¡û
>W1711357349
MDHF01000085
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
4465
4540
+
Ala
CGC
[ENA]
¡û
>W1711357471
MDHI01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
224986
224911
-
Ala
CGC
[ENA]
¡û
>W1711357546
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
2732384
2732309
-
Ala
CGC
[ENA]
¡û
>W1711357636
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
2777522
2777447
-
Ala
CGC
[ENA]
¡û
>W1711357680
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
2729058
2728983
-
Ala
CGC
[ENA]
¡û
>W1711360742
MDJX01000117
Actinomycetota
Clavibacter michiganensis [MDJX]
11868
11793
-
Ala
CGC
[ENA]
¡û
>W131204587
ATCC01000006
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
908268
908343
+
Ala
CGC
[ENA]
¡û
>C006162
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
2755264
2755189
-
Ala
CGC
[Ensembl]
¡û
>C08003533
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
48161
48236
+
Ala
CGC
[Ensembl]
¡û
>W141291998
JAUF01000079
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
22559
22484
-
Ala
CGC
[ENA]
¡û
>WENV170784354
MCHG01001021
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
110
35
-
Ala
CGC
[ENA]
¢þ
>C181143940
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
2227610
2227537
-
Ala
CGC
-
¡û
>W1910182599
BJNA01000019
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
37402
37327
-
Ala
CGC
[ENA]
¡û
>W1910839790
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1619258
1619331
+
Ala
CGC
[ENA]
¡û
>W1910857563
NBXA01000025
Actinomycetota
Subtercola boreus P27444 [NBXA]
34096
34023
-
Ala
CGC
[ENA]
¡û
>W1910857607
NBXB01000032
Actinomycetota
Subtercola boreus P27479 [NBXB]
2083
2009
-
Ala
CGC
[ENA]
¡û
>W1910857652
NBXC01000024
Actinomycetota
Subtercola boreus P27924 [NBXC]
38139
38066
-
Ala
CGC
[ENA]
¡û
>W1910857695
NBXD01000024
Actinomycetota
Subtercola boreus P27979 [NBXD]
38139
38066
-
Ala
CGC
[ENA]
¡û
>W1910857738
NBXE01000029
Actinomycetota
Subtercola boreus P28004 [NBXE]
38139
38066
-
Ala
CGC
[ENA]
¡û
>W1911748202
QWEA01000479
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
220
293
+
Ala
CGC
[ENA]
¡û
>W1911748278
QWEC01000062
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
274
347
+
Ala
CGC
[ENA]
¡û
>W1911748328
QWED01000165
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
806
879
+
Ala
CGC
[ENA]
¡û
>W1911748385
QWEE01000625
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
390
463
+
Ala
CGC
[ENA]
¡û
>W1911749645
QWGT01000513
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
237
310
+
Ala
CGC
[ENA]
¡û
>W1911749689
QWGU01000679
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
406
333
-
Ala
CGC
[ENA]
¡û
>W1911749733
QWGV01000868
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
261
334
+
Ala
CGC
[ENA]
¡û
>W1810058167
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
140407
140482
+
Ala
CGC
[ENA]
¡û
>W1810277174
PSTQ01000001
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
142040
142113
+
Ala
CGC
[ENA]
¡û
>W1810277230
PSTR01000002
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
211772
211699
-
Ala
CGC
[ENA]
¡û
>W1810277369
PSTU01000011
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
1050912
1050837
-
Ala
CGC
[ENA]
¡û
>W1810277429
PSTV01000023
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
123814
123741
-
Ala
CGC
[ENA]
¡û
>W1810277482
PSTW01000027
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
124022
123949
-
Ala
CGC
[ENA]
¡û
>W1810277567
PSTY01000020
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
82421
82346
-
Ala
CGC
[ENA]
¡û
>W1810277660
PSUA01000012
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
658343
658270
-
Ala
CGC
[ENA]
¡û
>W1810569025
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
928441
928368
-
Ala
CGC
[ENA]
¡û
>W1810673929
QJVC01000021
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
314
388
+
Ala
CGC
[ENA]
¡û
>W1810674009
QJVE01000005
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
203579
203503
-
Ala
CGC
[ENA]
¡û
>C151075659
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2409505
2409430
-
Ala
CGC
[Ensembl]
¡û
>C151095718
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
2518932
2518857
-
Ala
CGC
-
¡û
>C151097198
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
2754432
2754357
-
Ala
CGC
-
¡û
>W1511489499
JWSZ01000001
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
346350
346425
+
Ala
CGC
[ENA]
¡û
>W1511570104
LAKL01000025
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
12026
11951
-
Ala
CGC
[ENA]
¡û
>W1610724666
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1584360
1584287
-
Ala
CGC
[ENA]
¡û
>W1610867035
LQXA01000028
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
86017
86092
+
Ala
CGC
[ENA]
¡û
>W1610902094
LRYC01000049
Actinomycetota
Microbacterium hominis [LRYC]
46850
46775
-
Ala
CGC
[ENA]
¡û
>W1710520646
FNFU01000004
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
11299
11224
-
Ala
CGC
[ENA]
¡û
>W1710537479
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
4094508
4094583
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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